RNA id: XR_005640308.1


Basic Information

Item Value
RNA id XR_005640308.1
length 3448
RNA type transcript
GC content 0.42
exon number 16
gene id soat1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22492957 ~ 22501015 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTCAACATCTCCTTTGTCAATACAATGAGGAAGGTGAGCAGCAGCCCAGATGGTTGTGATTGAAGGAgtttgaaccatagactgtataaaatagggCTGAACTCGACAACGTCGGAGGTCTACCTAACTAGAGAGCGCCCGGCGGTTTGAAGCGAGATGGAGAGCGGGGATGACAGTGGCCTCCGGTCTCGCTGCCAAGCCATTCCTAAACTGCCCACCTTCCCTGACTTGGATAACTCTTTGGATGAGGAGCGTAATCAACAGCAACACCAGCAAGGCAATGGAGGCAACCACGTTTCCAGCAATGGAAAAATTGAAGTGGAACATGTGATCAGCAAAAAGCTACAACTGAAAAGGAAAGCAGAGTACCTGAAGAGTGACCTGATGCATCAGTTTGACAGTCAGGTTAATGACTTCATGGACAGTCTCATCGAGGAGTCGGCCAGCCTGGAGTCTGCACCTGTCCCTGCTGTCTTCTCGCCTCTGCTGTCAGACAAGGAGAGAAGTAAACTTGGgtctttCCGTCCTCCTCATGGCCAGGGCAAGCTGTTTGTCAGCCGCAGGTCCCTCTTAGATGAGCTGTTTGAGGTGAACCACATCAGGACTATCTACCACATGTTTATTGCCCTGCTCATTCTCTTTATCCTCAGTACACTGGTGGTAGATATCATTGATGAAGGCAGACTGGTGCTGCACTTTGACCTGCTGGTCTATGCATTTGGACAGTTCCCTCTGGTGGTGTGCACATGGATCTGCATGTTCCTGTCTGTGTTGCTGGTTCCCTACACCCTGTTCCATTTGTGGTCACAGACCCAGTCTGGGTCTTGGAGTCACCCTAGGTTGTGCAGTTTGCTGTTTGGCTCTGCATTCCTGCTCTACCAAGCTCTGGGTGTGGGATTCCTGCCTACATATGTGGTGGTGACCAACAGTTTTCCACCTGCATCCTGTTTCATCATCATCCTGGAACAGGTGCGTCTAATTATGAAAGCCCACTCCTTTGTCAGGGAGAATGTACCAAGAGTCCTAACCTGGGCTAAAGAAAAGACCAGTCCCCGCCCAGTGGTCCCTCAGGTCTCTCAGTATATCTACTTTCTGTTTGCACCAACACTCATCTACAGAGACAAGTACCCCAGGAACCCAGTGATCAGATGGGGCTATGTGGCCACAAAGTTACTTCAGGTACTAGGCTGTCTGTTTTATGCCTATTACGTGTTTGTGCGGCTGTGCATCCCTCAGTTCCGCAGCATCAGTCTGCAGCTGTTTGACCTGAGGGCCATGGTCCTCTGCATCTTTAACTCCATCTTGCCAGGAGTGTTGATCCTCTTCCTGGGATTCTTTGCCTTCCTTCACTGTTGGCTAAATGCTTTTGCTGAGATGCTCCGCTTTGCTGACAGGATGTTTTACAAGGATTGGTGGAACTCAACCTCTTTTGCTAATTACTATCGCACTTGGAACGTAGTGGTCCATGACTGGCTGTACTACTATGTGTACCGAGATCTCCTGTTGATGTCTCAGAGGCGTTTCAGACCAGTAGCCATGCTGTTTGTGTTTACAGTGTCTGCAGTGGTCCATGAGTACATTCTTGCAATCTGCTTTGGTTTCTTCTATCCCGTGCTCTTCTGCCTCTTTATGTGCTTTGGAAGAAAGGACCCATCTGGAACATAATCATGTGGACATCCCTCTTCCTGGGTCAGGGAGTCATTATCTGTCTGTACTCCCAGGAGTGGTATGCCCAGTGCTACTGCCCCCTGAAGGAGCCTTCATTCCTTGAGTTACTGAAGCCTCGGTCCTGGAGCTGTCAGAGAGGCCTAATGGCAGACTCTGATATGCTGTGATCTACGTTTGGACTACTGCAGAGGATCAATATAAATTTAaccagcctttcttttactgtcatAACTTCTGGTCTTTCggtttgttttatattattgcACTAAGGTCATGAGTCATGACTGAGTCTGTGTATGAATGTATGGAAGAGATCCAATTATTATCTGCCAAAATGTTCTTTACTTTAACAGCAATGTCACAGTGATGCCTTACTTAAAAAAGACAGACCCAACAAAATTACAAGTTCACATAAAATCGCATgtgaaatcttttatttttatgtaatattttttttttacttattactTTTGCCTTGATCAACTGTGAAACCACTCCCTGTGCCAATATGATAGTGGCAAACATTAAATATGGCTGTGGAATACAAACAAATACTCTATACATAACATATCACGTTTGCAATTACTACTCTATTATAGATAACATTTAATATGTTTGGAAAGCCTTTcaatgtgatttattttcacTGCCAATAAGatgtattttgaaaaatggCCACTGTTTGGTGTTTTGTATAAATCTAGGAGGAGCTGTGGCTGCTGTATTATAGTTCTATTGTAGTTTGAGAGTAATGTGAAGGTGAAATCACTACAGAATAACTTACAACTGTAAATGTTGCAGCTGGCTGCTAGAATTATGTAACATTGAAATAGTGATGATACTTAATTAGCAATAAGGGCTACAGATTGCTTTGGCAGATACTGACATGAAACATTGTAcataaaattactttttttttttttttaaatgtcaaactaACAGAAGATGGAATGTATGTATATGCTCAGTGTGCTTTTAGTTCCTGTGGTCTTGAAACaatttatttacacatttgtattattttgaGGTAATCACAAAGTTAATGCACAGTTAATGTTGCCAATTCTGACATTTCAATGCAGGGATACTGTATTTACAGTTGTGAATAGTGAGATGCACAATATGAAGTAAAAACCAGCAATGACAAACGGGGCACTTCCAAAAACAGTATGACCACAAGGTGGCACTGTATTAAAAGCTTTTACTTTTGATTCGTCCTCTGCTCTATTTGGCTGTGAATTGTGGTCAGGAGTAAGAGAGACTTTCCCAGTGTCCCTTATATTAACAAACACAATTACCAGCAacttgtttttgtaaaatatgtaCAGATAATAGCAGAAATATTGGAATGCCTTGTGGTACTTTCTATTAAGTAACTCTTGAGAACTCCACATTTGGCTAAAGCCTTGGTCTTGCTTTATGCCTTTGAGATTTTGTTAACAAGGATAATGTAGTCAAAAGACCCAACCTGCAGAAATGCTGTTTATTGAAATAAGATATTTATATTTTGGAGCAGAGCTTTTGTGTTCATTatggtctcttttttttttttctctggccTTGAATAGCTAATTTTGTCAGGTGACAATTTAATGACTCAGTATGTTGTTCTGTCTACTGATGTAGAAATGATGTAGTCTGGTACATTCTTTAAAGACACATCAAAGTACAAGAACTATTCAGAAAGAAATGAAGTATGTTCCCTCTTTTATGAATGTGTTGTATCATAAATGTCTAATGTAATGGTCAATGTGCCAATTAAATAGTATTGAACTGTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008374 O-acyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131333 lncRNA upstream 170102 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 176599 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 318564 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 334999 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 399583 22091389 ~ 22093374 (+) True G97263
TU131429 lncRNA downstream 70739 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA downstream 70780 22571795 ~ 22576548 (+) True LOC120566218
TU131439 lncRNA downstream 93481 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 93772 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 156484 22657499 ~ 22676178 (+) True rnf11b
XM_039811777.1 mRNA upstream 1722 22485511 ~ 22491235 (+) True LOC120565764
XM_039810184.1 mRNA upstream 7797 22458461 ~ 22485160 (+) True si:dkey-21p1.3
XM_039810182.1 mRNA upstream 38960 22360531 ~ 22453997 (+) True LOC120564914
XM_039812025.1 mRNA upstream 233846 22229405 ~ 22259111 (+) False acbd6
XM_039812024.1 mRNA upstream 233846 22229406 ~ 22259111 (+) True acbd6
XM_039812091.1 mRNA downstream 533 22501548 ~ 22529009 (+) True abl2
XM_039812093.1 mRNA downstream 533 22501548 ~ 22529009 (+) False abl2
XM_039812092.1 mRNA downstream 533 22501548 ~ 22529009 (+) False abl2
XM_039812094.1 mRNA downstream 13683 22514698 ~ 22529009 (+) False abl2
XM_039812095.1 mRNA downstream 13683 22514698 ~ 22529009 (+) False abl2
XR_005640282.1 other upstream 4854 22485511 ~ 22488103 (+) False LOC120565764
TU131315 other upstream 205685 22283646 ~ 22287272 (+) True G97321
TU131036 other upstream 710957 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2961280 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3707321 18782600 ~ 18785636 (+) True G96418
XR_005640352.1 other downstream 71044 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 71454 22572469 ~ 22572551 (+) True LOC120566227
XR_005640356.1 other downstream 71708 22572723 ~ 22572804 (+) True LOC120566222
XR_005640353.1 other downstream 72152 22573167 ~ 22573247 (+) True LOC120566219
XR_005640360.1 other downstream 72615 22573630 ~ 22573692 (+) True LOC120566226

Expression Profile