RNA id: XM_039812104.1


Basic Information

Item Value
RNA id XM_039812104.1
length 3176
RNA type mRNA
GC content 0.51
exon number 9
gene id usp1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12450052 ~ 12459145 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTGCTTATATAATTTAACGCAAGTCTACGCACATTTGCAAGCATTACGTTTAAGTTTAATATTAGATGTGACCGTTATTCGAACATTTTTTGCCggatgttttgttgttgtgtgtcggTGTTTCACTGGCAATGTAGCCACCAGCCACCATTAGTGGGTCTTCCAATAGGAAAAAGCGCCAACTGCTTTTTCTACACCGTCTGAATCGTCAAACAAGTAAATGGCTCAAAAACTGGATATTTCGTGAAATATATGAAACTTCAAAGTGGATTAACTCATTCAGGTACCGGAAAAAGGATGCCAGGTCTGCAGGGGGAAAATGTTGTGGCTGCGCTAGGGAGCCCCATCAAGAGGAGTAAACTGTCTCTGAAGTTCCTCCAGAAGAAAGAAACCAAACGGGCTCTGGATTTCTCTGAACCTCAAGCAGATGAACCCAAAGCAGATGAACAAGAGGAGCCTGAGGCAAGCAGCTGCGATCAGGTGGTCCCTGGTCCTTCTCCATGTCCAACCTCACCTGGCCTTCTGCTCCCATCTGAGAAGAGAGAGACCTTGGTGCCATTTGTGGGGCTCAACAACTTGGGCAACACCTGCTATTTGAACAGCATCTTACAGGTGCTGTACTACTGCCCAGGGCTCAGAGACGGTGTTAAGAAACTGTACAACCTGtctaaaagaaaagacaaaccaAAGGAAGAAACTGATAAAAGCGAAGAGCAGTCAGAAGTTGTGGCTGAAGATGTGTCTGCTCAAATTGAGCTCCTTGGGAGCTTCAGCGGTCTGATAGCATCAGTGGAGCAGCTGCAGTCCAGCTTTCTGTTAAACCCCGACAGCTTCAGTGATGGAGAACTCGCCACTCCGCCTCGAAAAATACTCCACACACTCAGGCAGCTGAACCCCATGTATGAGGGCTATCTTCAGCATGACGCCCAGGAGGTGCTGCAGTGCATcctgggaaatatccaggagGCTTGTGTCACCATCAGAAAGGAGTTGGATCGGGAGGATGCCGACGAGACTGAGGTTAAACTTGAGGCTGGTGTCCATTTGGGTTCAAGCAGCCCTGCGACAGAATCCAAAACTCCCCCAGAAGAGGACGGCCAAGTCAGTGGCAAGAGAAAGAGTGACACTGAAGTGGGAAATGCTAAAAAGAAGCCAAAATCTGTCAAGTCTGATGAAGAGGATAATAGACCCTTCACACGCTCCAAAAGGAAGTCCTCCAGTGACATCACAATGGACAGCACCCGGGACAAAGATAAAGAGAAGGCGGAGAATGAAGGGATGAAGAAACTGAATGGGGAGGAGGACAAAGGGAGTGACAGTGAAGGGAAAGGTGAACATGCACCTAAAGAGTCTGatgggaaaagaaagaagagatcTAAGCTGAGCTGGCTGAGGCCTTCTGGGAAACAGCCGAGTATTTTCTCCAAGTTCCTCAGCGTGGGGAAGATCAGCTCCGCGAGTGTGAAGAACCAAAACAAACCAGAGCAGGAGAATGGACTGAGCGACGACCAAAGTCCGAAGGAGAAGACCAGTGTGGAGAGTTCACCACACAACGTGGCTGAAGACAAGAAGGCAGGAAAACTTCACGAGGGCCTGGACCTGATGGAGCACTTGTTCCAGGGCCGGCTGGTTCTTAGGACTCGCTGTCTGGAGTGCGAGAGCttcacagagaggagagaagacttCCAGGACATCAGCGTCCCAGTGCTCGATGACGAACCCAGCAGCCCAGACGACCTTTCTGATGTCTCTCCTGATCCCAAACCAGAGGTGAAGACACTGAAATGGGCCATCGCCCAGTTTGCTTCAGTGGAGCGCATCGTTGGGGAGGACAAATACTTCTGCGAGACGTGTCACCATTACACCGAGGCTGAGAGAAGTCTGCTGTTTGACAAAACTCCTGAAGTGATCACCATTCACCTGAAGCGCTTCTCTGCCAACAGTCTGGACCTGGACCCATATGCAGGTCTGTCCAAAGTGAACACTCCCTTGCAAACCCCGCTGACCTTGTCTCTGGAGGAGTGGTGCACCCGGCCCTCGTCCACCGATGGCCAACGCTATCAGCTGTTTGCCGTGGTCATGCATAGTGGTGTCACCATCAGCAGCGGCCACTACACCGCCTTCGTCCGCATGTCTGATCTGAAAGAAGCGAAGCTCCTGCTGCAGGACAGAAAAGAAAccgaggaagaggagagggagagtaaAGAGGAAACGCGGGTGAAAGACAAAGCCCTGGACTACGATGATGGGGAGGTGTCTTTCAGCCTGAATGCGAGGGGTCAGAGGGGCGCAAGTTTGGCTAGCAGCAAAACACGAGGAAAGAAGCTGTCGGAGGGCGGGGTTGGACTCCTGGGGGGCCAGAGGAGTCTGTCTAGCTGTGCGCTTGGCAGCAGCAAACGCACGGAAAAAGCCGCCAGCAGTGGATCAACCGAGGGATCCAAACGGAGGAAACCCGTCAACCGCACGGGCCAAAACACTGAAGCAGGACTAAACAAGGAGGCTAGGGTAGGAGAGGAGGAATTAACTCCTTCCCGTGGCGGCGTGGAGGCCACCGAGCAGCAGGCTTTGAACAGCCTCCTTGAATATGAGGGCAAATGGCTGCTGTTTGATGACTCGGAGGTGCGTTTGTTTGAGGAAGAGGATTTCCTGCAAGCCTGCTCTCCTGAGACGTCCTCGTCATCGACGCCGTACCTGCTGTTCTACAGAAGGATGCCCGAACGCGGACGCTAACGTGAACACTGTGCACGCTGTTGACTGACTGGGGGTGTTGTTGTGCCAGACTGCTCTTTGGCAGCTGGACACCCAGACAGTCTATTTGCAATACTAGAACGACTGCCAAGAATACTGTGGCAGTGATATTAGCAACTGGACTGAAGAGACCTTTCACAGAGCAAACAGTCTGGTCTCCGTGTGGGACCAAGGCTGTTTAGAGCTGTTAGTGGACTCTCACCTCAGTCTGTCTGTTAATTTAGGTTCAAAGTCATATTTTAGAAATACTCCCGACAACTTTCTACGTACTGGGATTACTTCACCTTTTGagaggatttttctttttttatgtgacCCTTGCCTTTTGTAAACTTTAAGTACAGTGAGCTGCCTTTTTCCTGTCTGTACTAATATTTCTTGGACACTGGCTTTGATACTTTCTCTGTCATCTACACATGTcacgt

Function

GO: NA

KEGG:

id description
K11832 USP1; ubiquitin carboxyl-terminal hydrolase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127958 lncRNA upstream 6972 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA upstream 8191 12353673 ~ 12441861 (+) False lrp8
TU127967 lncRNA upstream 92033 12311823 ~ 12358019 (+) False lrp8
TU127963 lncRNA upstream 253436 12161638 ~ 12196616 (+) False lrp8
TU127883 lncRNA upstream 530015 11916631 ~ 11920037 (+) True G94813
TU128119 lncRNA downstream 405870 12865015 ~ 12865841 (+) False ror1
TU128136 lncRNA downstream 406767 12865912 ~ 12866251 (+) True G94997
TU128141 lncRNA downstream 536090 12995235 ~ 12995654 (+) True G95002
TU128143 lncRNA downstream 639642 13098787 ~ 13100338 (+) False raver2
TU128168 lncRNA downstream 648544 13107689 ~ 13112320 (+) True G95027
XM_039810698.1 mRNA upstream 96438 12169510 ~ 12353614 (+) True lrp8
XM_039810700.1 mRNA upstream 96438 12169510 ~ 12353614 (+) False lrp8
XM_039810703.1 mRNA upstream 96438 12169511 ~ 12353614 (+) False lrp8
XM_039810704.1 mRNA upstream 96438 12169511 ~ 12353614 (+) False lrp8
XM_039810699.1 mRNA upstream 96438 12169511 ~ 12353614 (+) False lrp8
XM_039810642.1 mRNA downstream 35609 12494754 ~ 12499047 (+) True angptl3
XM_039812171.1 mRNA downstream 53461 12512606 ~ 12520145 (+) False atg4c
XM_039812170.1 mRNA downstream 53471 12512616 ~ 12522434 (+) True atg4c
XM_039810268.1 mRNA downstream 202774 12661919 ~ 12663893 (+) True foxd3
XM_039811305.1 mRNA downstream 211076 12670221 ~ 12690258 (+) True alg6
TU127781 other upstream 1005519 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 1201405 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1501806 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1508808 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 2290245 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 546431 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 713880 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 920253 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 2160213 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 2351223 14810368 ~ 14916606 (+) False dennd1b

Expression Profile