RNA id: XM_039812207.1


Basic Information

Item Value
RNA id XM_039812207.1
length 2596
RNA type mRNA
GC content 0.46
exon number 15
gene id LOC120566012
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9406710 ~ 9505927 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTtgggacaaacacacaaacacacagaacagcAGTCGTCAAAGAAGTAAGCCTCAGTTAGACTCGGTCACTGCCCAGCTGCTCGTCTAAATGCAATTGTCTTTAATCCTTTTGTTTCTCCAGCTGTGGGGGAACGTGGACGTTTCTTTATCACAGAATGcatgtCCAAAACCCCCGGAGGTTCCTCACGCCAGTGTTTCAGAAGTGACCAAAAAAGCTGTGTACCAACAAGGAAACGTGATCCATTTCGTTTGTGAAACTGGTTATACATCATTCCCACCCATCAGATATGCATGTACAGAGAATGGCTGGTTATTAACCAGTCGGGGAAGATGCAACTtaaagcCATGTGTACTTCCCGATGACACACCCAATGGCTATTATCAAATAATCCACGGGGAAGAGTTTGTTTTTGGAACCACAATCAAATACTTTTGTAATGAAGGGTATCAAATGGTAAGTAAGGATGACACCAGGACTTGTATGCTGGACAAATGGACCAATCATGTGCCAATATGTGATCGTTTGAGCTGCGACCCCCCGCCTGCAGATGGAGGAGTTACAGTAAAAGGTTTACCAGATAATGACAATCCCATTTTCCCTGACCACCTCCTCACATTCAGCTGTGAAAGACCTGGGAAATATCTGAATGGTAGTTCAGTGCTGAGATGTGGTCAAGATGGACAGTGGGATCATCCATTCCCCACTTGTGAAAaCCTAACCAGACACGAGGAGGGATGTGGGCAAAATTGTGCAGaaaactgcAAAGTCCCAGGTCTATCAGACGACTTACAACTCACCACACATGAACCAGGCGATCAACTCAGAACAGGAGAAAAGTTGACGTTTACTTGCCGCCGGCGTGGAGACTTTGTAAGAGGGAAAGCTGAGGTGGAATGTTTAGCAGGCGGACGGTGGAGTGATCCATTCCCAACATGTGGAGCTCCTTCAGGTTGTCGGACACCACCACACATTGCAGATGCAGACACCAGGGGAACTCTTAAATCCCAGTACAGACATGGAGAAAGGGTTGAATACAGCTGTCAGAATGTCTACATTATAGAGGGTGATGCTTACAAAACCTGCAACAATGGTGAATGGACCGGACAGATGAGATGCCTCAGTTCACCATCGAGCTGTAACCCCCCGCCTGCAGATGGAGGGGTTACAGTAATAGGTTTACCAGAAAATGACAATCCCATTCTTCCTGACGGCCTCCTCGCATTCATCTGTGAAGGACCTGGGAAATATctgaatggcaattcagtgctGAGATGTGGTCAAGATGGACAGTGGGATCATCCATTCCCCACTTGTGAAGaaaactgcAAAGTCCCAGGTCTATCAGACGGCTTACAACTCCCCACACATGAACCAGGCGATCAACTAAGAACAGGAGAAAAGTTGACGTTTACTTGCCGCCGGCGTGGAGACTTTCTAAGAGGGAAAGCTGAGGTTGAATGTTTAGCAGGCGGACGGTGGAGTGATCCATTCCCAACATGTGGAGCTCCTTCAGGTTGTGGGACACCACCACACATTGCAGATGCAGACACCAGGGGAACTCTTAAATCCCAGTACAGACATGGAGAAAGGGTTGAATACAGCTGTCAGAATTACTACATTATGGAGGGTGAGATTTACAAAACCTGCCACAATGGTGAATGGACCGGACAGATGAGATGCCTCAGTTCACCATCGAGCTGTAACCCCCCGCCTGCAGATGGAGGGGTTACAGTAATAGGTTTACCAGAAAATGACAATCCCATTCTTCCTGACCGCCTCCTCGCATTCATCTGTGAAGGACCTGGGAAATATCTGAATGGCAGTTCAGTGCTGAGATGTGGTCAAGATGGACAGTGGGATCATCCATTCCCCACTTGTGAAGaaaactgcAAAGTCCCAGGTCTATCAGACGGCTTACAACTCACCACACATGAACCAGGCGATCAACTCAGAACAGGAGAAAAGTTGATGTTTAATTGCCGCCGGCGTGGAGACTTTGTAAGAGGGAAAGCTGAGGTTGAATGTTTAGCAGGCGGACGGTGGAGTGATCCATTCCCAACATGTGGAGctcCTTCAGGTTGTGGGATACCACCACACATTGCAGATGCAGACACCAGGGGAACTCTTAAATCCCAGTACAGACATGGAGAAAGGGTTGAATACAGCTGTCAGAATTACTACACTATGGAGGGTGAGATTTACAAAACCTGCCACAATGGTGAATGGACCGGACAGATGAGATGCCTCAAACCCTGTACTGTGGATAGAGAGCTTATTAACAGATATAATATTGCCTTCAGATATGGTCATATTGATAAGCTTTATTCATACCATAATGATTTTATCACATTCACTTGTACTGCAGGTCATAGACCTACCGGCTCATTGCCCATGCGTCAGCAGTGTATTGATGGTGTGGTGAACCTGCCCACTTGCCAGTAAAGGTTTTTAGTTAACTGGATGTGATGAACATGATCTGGCCGGACAAACATGTAAACGATTAACAAGAAGTACAGTTATTAACTTATCTTCTGTACCTACTTCTGCTCTGTCAACTGAGACAGTTttaataaaacatacatgttcACGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127068 lncRNA upstream 236953 9169319 ~ 9169757 (+) True G94201
TU127065 lncRNA upstream 237833 9147162 ~ 9168877 (+) False G94199
TU127056 lncRNA upstream 310418 9089828 ~ 9096292 (+) True G94192
TU127026 lncRNA upstream 405004 9001456 ~ 9001706 (+) True G94169
TU127024 lncRNA upstream 406250 9000163 ~ 9000460 (+) True G94167
TU127117 lncRNA downstream 32917 9484003 ~ 9485965 (+) True G94232
TU127112 lncRNA downstream 42895 9493981 ~ 9495328 (+) True LOC120566016
XR_005640322.1 lncRNA downstream 43067 9494153 ~ 9495357 (+) False LOC120566016
TU127116 lncRNA downstream 89451 9540537 ~ 9541059 (+) True G94231
TU127114 lncRNA downstream 90381 9541467 ~ 9543494 (+) False LOC120566011
XM_039810147.1 mRNA upstream 322853 9080859 ~ 9083857 (+) True LOC120564889
XM_039812316.1 mRNA upstream 336034 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA upstream 336034 9067182 ~ 9070676 (+) False LOC120566074
XM_039810130.1 mRNA upstream 344674 9057341 ~ 9062036 (+) True LOC120564878
XM_039810246.1 mRNA upstream 373030 9021517 ~ 9033680 (+) True LOC120564973
XM_039812213.1 mRNA downstream 11359 9462445 ~ 9473374 (+) True LOC120566014
XM_039812218.1 mRNA downstream 124172 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 124350 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 138070 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 163709 9614795 ~ 9671788 (+) True fnbp1l
TU127064 other upstream 247015 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1152135 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1160889 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1501463 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2056123 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 101210 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 121212 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 366535 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 393663 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 393663 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile