RNA id: XM_039812238.1


Basic Information

Item Value
RNA id XM_039812238.1
length 3170
RNA type mRNA
GC content 0.46
exon number 23
gene id dnai3
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11556357 ~ 11576634 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGCCAACACTGAACAGTGAAGCTATCCCAAGAGCAAGGATGCCACCCAAGAAACCAAAAAATGGAAAAAGCAGTGCAGGCAGTAAGGGCAAAGGAAAAAAGATTCAGTCACCGGCTGCACATGATTGGGAACTCTCTAACCAAGACCATCCTGAGGATATCTTCCCCATGGTCCTGACATCAGCCACCCAGGAGCTCTTTGGCTGCCTAGCTGATGAGGACGTCACAGGGGAGAGCCCTTACAAGCTGCTGGAAAAAGACGACATCATACAGGACATTAAGACAAGAGCTGCAGTGTCTGATTTCAGCCCTGTGAAGCAGATTGTGCTGGACTACCCAGAGGATGAGCTCTTGCTGGTTTATGACAGGGACTTCATCTATGGCCAGAGCTTCTACCTGGTTCTGACACCGGAAGCTAAGGACAGAATCCTCAACCCCCCAAAGCCTGAGACACCAGAAGTGGTTGAGAAGGAAGTCGTTAAAACCCCAGAACCAAAGCCATGGATATCATTTGGCAGTGATAAGGAAATAGATGAAGAAGCTTTCAAAGAGTCCAGAGAAAAGTTGTTGTACAAGTTCTCCAGAGTGCGGAGGAAGTTTGGGGTACCAGTCTGTTTTTCTGACCGCAACACTGCAGACTACTTAGAGTGTGCTTCCTACCAAGACAGCAGATTCAGCATCAAACAGATGCAGAGGGACTGCGGGATGCAGGCTGTTCCCAGACTGCAGAGCAGCAGTGCTCAGACACAGTGGAAGTTTCAGAAGAATATCTTTACCCAATACACGCCAAGAGAGTTAAGtgttgaagaaaaagagaacatCCTCCAGCTTGAGAGTCTGAAGAATTTTTGCAACTCAGTGACCCCCAGGGTTTTGCGAGCCCTTCAGCAGGAAGGAATCATGAATGTGTTCTTTGATGACTGGAAGGCTCTGGGGACAGCAACTGAAGACGGTGACTGGGCTGGGAAGGTTTCCGAAGGTTTTATGCTTTATCAGGCCTTCACAGACCAGAAGTACACAAAGGACAAGAAAATCTGCAGCGTTAATTGGCACCCTACCATCTACGGTGTGATAGCTGTGGCTTTGACAGGAAAAAAGGAGGAGCAGTTGAACGAGTCTGCCGTCAGAGCTTCTTTCATTCTCTTCTACACCTTCTCCGACCCCTCTAATCCCCAGTTGCTGCTGGAGTGCCCAGATGACATTTTTGCCTTTGAGTTCTGCCCCTCTGATCCAAATATTATCGTTGGCGGCTGCATAAATGGCCAGGTCGTGTTGTGGGACATTTCTGCTCACGTCACACGCTTACAGGGAACACAGCCTGGTAAAAAGGTTTCTGTCAACACTGACACAGGCGATTTCCACCAGGACCTCGATGACAACAAAGAGAATAAGACTCCTATTGTGCGCTACTGTGCAGTGTCTGCATTAGATAGCAGCCACAAAGCACCAATTACTGATGTCCAGTGGCTGCCAGCAACATTTGAGGTGACCAGAACGGGCTTACCGGTGGAAAACATGTATAACGTTTCTACTCAAGTTGTCACCTGCTCCCCTGACTGCACTATAATGTTCTGGGATGTGAGAGTGTCCAATCTGTTGAGCCACTCAGCATCAGAAAGGAGGCAGATTATGGATCAGAAGACACCCTACAGTGTCCCCGACACTTTCAAACACCTGGACCGGACATGGAAACCTCTCTTCAGGGTTTCCCTGCCAAAGATCGATACCAGTGGAGAATACGCTCCTCTGAAGTTCAACCTGGAACACTACACCTGTAACGCTAATGAAAATGGTGATAGCTCAAAGGTCATCCCAGACTACAGCCAACTCATTCTGCCCTCGGCTAAAACACTCAAAGCTCTGGAAGATGTCAATACCAAACTCTATATTGGAACAGAGGATGGGGAGATTATTTACATTGACTGGAAACTGGGGAAGGATGACTCTGGACGGCTGCAAAgtGCCAAGCCCGTCCACTGTTTTAGCATCCATCACTGGCTGGTGAATACGGTGCAACGGTCACCCTTCTTCAAAGACATTATTTTGACAGTGGGGAGCTGGAACTTTGCCATCTGGAAGGAGGAAGTCATGGATGGCCCCATCATCCTGTCAGCAAGCTCTGAGCAGGTGTGCACTGTGGGATGCTGGTCCCTGTCCCGACCAGCTGTTTTCTTCATTGGGAAAGAGGATGGCAGCATTGAGGTGTGGAACCTGCTGGAAAAGACCAATGAACCCGTGCAGGTCCACTCACACGTCACCAATGCCAAGATTACCTGCATCAAACCCTGGGCCGCCTCCTCCAAGCAGCACTTCCTGGCTGTGACTGATGACCTTGGAATGGTCCGTGTTTTTGAAATCCCGAAGACACTCTACGTTCCCTCCAGGAGTGAGAGTTTAAATGTGAAGAAATACTTTGAGCTGGAGGAGGACAGGTTGAAGGATCTTTTGAGAAGAGAGGAACTCTGGGAAAAACAGAAGGAAGCTGAAGGACTCAAGAAGAGAACGGAACCTGATAAGCCAGTCACATCCCTGGTGGAGAATGAAGAGGTGAATGTGAAGGAGTACAATGATTACCTGATGCTGGAGGAAAGCGTCCTGAAGGGCATGGGCCTGTGGCGAGCTCCAGCCAACACACGAGACACCTGATAtatcacacacattaacacatacaCATCTGCACCAATTGCATTTCATATAAAAcaggtttttattattttttattatttatatgttttgttttataaaaacacTGTCTTTCAACATCTTTCATTTGAAATGTGTAtctttgttgctgttttcaCAATTGTGTATCATAACTactaatgtatgtatgtatgaatgaatgtctttttttattgaaatataaTCTATATGTAAAATCTGAGAACAGTGAACATTTTTGTATATTGATTCTGCCATCGACATTTAGACCATGTTCGGGTTGGTGCTTCAGGGTCAAACATGGATTTATTTTCATCCACCCATCTGAGATCTAGTTACTGGGTAATGCTATCCATTTGCCCCCTCTTCATCACCGCTCCCTGAGGATGCTGTCTGGAATACCTCAAGGATCTGACCTTTGCAGAAAGTCATTTTAAGGCTCTTTAATTTCATGATACTTACGTTGTTGTTGAAAGCTCCTCtagtattaaaatgtattttgtatggCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127746 lncRNA upstream 316120 11238444 ~ 11240237 (+) True G94706
TU127731 lncRNA upstream 361427 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 380140 11176004 ~ 11176217 (+) True G94690
TU127728 lncRNA upstream 429337 11126756 ~ 11127020 (+) True G94688
TU127727 lncRNA upstream 434673 11121469 ~ 11121684 (+) True G94687
TU127799 lncRNA downstream 154 11576788 ~ 11577261 (+) True G94747
TU127840 lncRNA downstream 74888 11651522 ~ 11659072 (+) True G94779
TU127859 lncRNA downstream 245017 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 339997 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 585004 12161638 ~ 12196616 (+) False lrp8
XM_039812239.1 mRNA upstream 7259 11525470 ~ 11549098 (+) False LOC120566036
XM_039812240.1 mRNA upstream 7259 11525478 ~ 11549098 (+) False LOC120566036
XM_039812242.1 mRNA upstream 7259 11525499 ~ 11549098 (+) False LOC120566036
XM_039812243.1 mRNA upstream 7259 11525604 ~ 11549098 (+) False LOC120566036
XM_039812244.1 mRNA upstream 7259 11533108 ~ 11549098 (+) True LOC120566036
XM_039812141.1 mRNA downstream 107728 11684362 ~ 11786933 (+) True LOC120565976
XM_039811821.1 mRNA downstream 212501 11789135 ~ 11821809 (+) True znhit6
XM_039810765.1 mRNA downstream 257921 11834555 ~ 11916573 (+) False ddah1
XM_039810764.1 mRNA downstream 263229 11839863 ~ 11916573 (+) True ddah1
XM_039810766.1 mRNA downstream 275369 11852003 ~ 11916573 (+) False ddah1
TU127781 other upstream 111824 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 307710 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 608111 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 615113 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1396550 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 1428942 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1596391 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 1802764 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 3042724 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 3233734 14810368 ~ 14916606 (+) False dennd1b

Expression Profile