RNA id: XM_039812239.1


Basic Information

Item Value
RNA id XM_039812239.1
length 3540
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC120566036
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11525470 ~ 11549098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCAACCATTCCGATGGCACATGAAGGCAGCAGCCAAGGAATCCTAATTGGAGGCAGATTTTCAGCGCGAGGGCGAGGAGTGGCTTCTTCAACTTCTGCTTCCCGAGACAACGGCGTCATCTTCCTCCCATATGGACGAGTGAGTAGTTTATTAGCTAAACAACAAGGCGAAATATTTTTTAAGAAGTTTTTAAGTCGCTGGAACTATTTTCTGAAGCTGATACCATGTTTGTGGTGTATTCGCGTACTTCAGTTTGAGATCCCACTTCCCTGCAGGATGGAGTCATCATGTCTGGACCTGGCTCTGGAAGGTGAGCGGCTCTGCAAGGCTGGTGAGTATCGTGTCGGCGTGTCCTTCTTTGAGTCTGCCATCCAGGTTGGAACAGAGGACCTTCAAATCCTTAGTGCCATCTACAGCCAGCTGGGCAATGCCTACTTTCACCTGCAAGAGTACAACAAAGCCCTAGAGTACCATCGGCATGATCTCACACTTACTAGAACTATTGGAGATGAACTTGGTGAGGCAAAGGCCAGTGGCAACCTTGGGAACACATTAAAGCTTTTAGGGCGGTATGATGAAGCAGTGGTTTGTTGCCAAAGACATTTGGAAATCACCAGAGCCATGTATGACAAGGTTGGGCAGGCTCGAGCGCTGTATAATTTCGGGAACGTTTACCATGCCAAGGGCAAAAGCATCTGCTGGACTGGAGCCGAGCCAGGAGAGTTCCCAGAGGAGGCCCGGATAGCCCTGAGGAAAGCTGCACAGTACTATGAagCAAACCTGTGCCTGGTGAAGGAGTTAGGTGATCGGGCAGCCCAGGGTCGCACCCATGGTAACCTTGGCAACACTTACTATCTGCTGGGTGACTTTGACGCTGCAGCAGCTGCACACGAAAAGCGGCTGCTCATCGCTAAAGAGTTTGGGGATAAGTCTGCTGAGAGGAGGGCCCACTGTAACCTTGGCAATGCTCACATTTTCCTCAGCCAGTTTGAAGTGGCGGCTGGTCATTACAAGAGAACTCTGCAGCTGGCCAGGCTTTTGAAGGACAAAGCAGTGGAGGCCCAGGCCTGTTACAGTCTAGGCAACACCTACACACTACTGCAGGACTATGACAGAGCCATTGATTACCATCTCAAACATCTGGTCATTGCTCAGGACCTCAATGACAGGGTGGGTGAAGGACGAGCATACTGGAGTCTAGGAAATGCTCACACTGCCCTGGGGAATCATCAGCAAGCAATGTACTTTGCTGAGAAACATCTGGAAATTGCCAAAGAGACGGGAGACAAAAGCGGTGAGATGACAGCCACGATGAACTTGTCAGACCTACGGCTGGTCGTAGGCCTGAAGTCCAACTCCAACATCCACCCCAACATCTTCCGCAACACCAACACTAACAGCTCTGCTCTCCCAGCAGGCTACCAGGGTTACCCCAGCCTCCAAGGGGTCAAGTCTCAACCAAGGATAAGAGACAGTGCAGAGACTGGACTGATTCCAAGTCCTGACAAAACTCAAACTGGGGATTCATCGGCTCATCCAGACTGGGGAGAGGATGTATTCCCCGGGTCGTCAAAAAACAACACGATCAAGGCTTCTACTAAGCTCTTCCTCTTCCAACGGCTGAAAAGCAAGAAGCAGAAGAACAAGCATGAGCCTTCAGCTCCTGAGCAGGAGGCACCATTGTCTCCTAAGCCAGGATCACGGGACACCATTGGAGAGGATGGCTTTTTCGACCTCCTCTCTCGTTTCCAGGGCAACAGGATGGACGACCAAAGGTGCTCCCTACTGTATGACCAGAGCCATCTCACGGTtcattcctctccctcctccaccccACCTGTAGCTGAAAGTAAATCTATTTTGGAGTGCGAAACACCGTTTCAGGATCCTGGTCATTTCCTGGAGCTGCTGGCCAGCTCCCAGGCCCGTCGTCTGGACGACCAACGAGTCAGCCTGAGCCATTTTCCTGGCTTACGTCTCAACACCTCCAACCCGCCTCGTACACCCTCCACCTCCAGCACAGATCAAGTCCCCCCACAAGCCCCGATCTCCAGTACAGATACCTCTCACACACCCTCCCTCTACAGTCGCCTCGAGGCAAGCGCTGAGCAGCCCGACGGGGACGATGTTTTCTTTGATATTCTAGTAAAGTGCCAGGGCTCCCGACTGAACGACCAGAGGTGTGCTGCTCCACCTTCTAAAACCAAAGGACCAACTGTTCCGGATGAGGATTTCTTCAGTCTCATCATGCGTTCCCAATCCAACAGGATGGAGGAGCAGCGAGTCCTGCCGCCCCCTGGCGTCACCCAATCCAAACCAGACTGACTCCATTACCCCTCCCACACCAAAGGATCAACCAGGGTTGACTTTGTGCTTGAAAGGATTAGCCTGCGTTGACCGACTCGGCTTCGCGACCCAGGTCAAGACGTGGGTCGGACACGGGTCGATTTCAATGTGAATTGCACAAGACCAGGGTCACTAACAAAGGGGTGGGACAAATGATGTAATTGGTTGAAAACGGGAGGCACAGTCGTCAAGGTCGCTGCACACTTGGcgaataatttttattttttttgtctcacttGAACTGAGAGCATCTGTCTCCACAAAATCATCTGTAGAGTGTTTGATggttatttatttgtgctttagaacgtaaTCGCTGTGGAACAACCTCCTATTCACGGGTCCATTCCGCTCTCTAGTCGACCGAGCTGCAGTTCAACCTGCAGGCTCCACTCACTTTCATTCCTGCCTTTTTGTATTGTCCTGACAACGTTCCTGCAAGACTACAAGGGACACTATTGGGAAACATCTCAAACAGTACTGGTcattgtgactgtaaaatgggAAATTTTAGGTTTTTTAAGACTTGTTTTTAGATAGCCAACAGTGTCTCTGGGTTGCCACCTTGTTTTTGGCGCCCCCTGCTGCCTGTTTTAATCAGAGCGCTCTGCACCAGTGACGTCTGCCTACTCTGGAGGCTTGCATCAAGCCACTCACACAAACTGTGGATTGTGGTTTTTCAAGTAGTTTGTACTGTATCCAAGGACATAAGCCAAACCAAAGGGATTTCTGCTTTATAATGATGGACAAAGAGACACGTGAACCTATCTCAAGCAATTAAGCAAACTGGAACATTGCACGGCTTGTTCTGCCTATTTCTGATATTTCAGCAAGTCTTTAAGAGTGGAACATCTCTGTTTGAATTGATCTCAGACCTCTCCAACAATAACTCAAATGACAAATCCTCTCTGGGGAAATAAAGgtctactgctactactgcagTGGTGGCTAGTGGAGCCAATTATAGCATCTGTTCCCCGATATTGCTTTCGAAAGACTTAAAGTATGTCAGTTTTATATTGTTAAGGGTTGTATAGAGTTGTTATTGCCATGAATTGAAATGGCCATTTTCTTTGTAACACGATTTTACAGGGGATTAACTGTAgtgtgaggggaaaaaaaaaaaaagttgttagaTTTTGTATTGAACCTTCTGACAATGGAGAAATAAAATCTCACGATTTTACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127746 lncRNA upstream 285233 11238444 ~ 11240237 (+) True G94706
TU127731 lncRNA upstream 330540 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 349253 11176004 ~ 11176217 (+) True G94690
TU127728 lncRNA upstream 398450 11126756 ~ 11127020 (+) True G94688
TU127727 lncRNA upstream 403786 11121469 ~ 11121684 (+) True G94687
TU127799 lncRNA downstream 27690 11576788 ~ 11577261 (+) True G94747
TU127840 lncRNA downstream 102424 11651522 ~ 11659072 (+) True G94779
TU127859 lncRNA downstream 272553 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 367533 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 612540 12161638 ~ 12196616 (+) False lrp8
XM_039812473.1 mRNA upstream 1522 11514958 ~ 11523948 (+) True si:ch211-262h13.5
XM_039810317.1 mRNA upstream 35432 11473356 ~ 11490038 (+) False LOC120565022
XM_039810318.1 mRNA upstream 35432 11473356 ~ 11490038 (+) False LOC120565022
XM_039810319.1 mRNA upstream 35432 11473924 ~ 11490038 (+) True LOC120565022
XM_039812048.1 mRNA upstream 67324 11359690 ~ 11458146 (+) True LOC120565923
XM_039812238.1 mRNA downstream 7259 11556357 ~ 11576634 (+) False dnai3
XM_039812237.1 mRNA downstream 7646 11556744 ~ 11576634 (+) True dnai3
XM_039812141.1 mRNA downstream 135264 11684362 ~ 11786933 (+) True LOC120565976
XM_039811821.1 mRNA downstream 240037 11789135 ~ 11821809 (+) True znhit6
XM_039810765.1 mRNA downstream 285457 11834555 ~ 11916573 (+) False ddah1
TU127781 other upstream 80937 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 276823 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 577224 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 584226 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1365663 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 1456478 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1623927 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 1830300 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 3070260 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 3261270 14810368 ~ 14916606 (+) False dennd1b

Expression Profile