RNA id: XM_039812277.1


Basic Information

Item Value
RNA id XM_039812277.1
length 1021
RNA type mRNA
GC content 0.51
exon number 4
gene id tm4sf18
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10696023 ~ 10714882 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACATACAGCAGGCTCTTGTcacttgtttttgtttcctgGCTCCCCAGCTCTGACCCTTCCCTCCCctcttgctctctttctcttgctcTCCTCGGCCCATTCCagttctctcctctcctccctgcgGTTGTGAGTGTGTTTTAGGTTGAGCGATGTGTTGTTCGGTGGGTTTTGCCAGGTCTCTGGGTCTGGCCCTGCTGCCTCTGGCCCTCTGCTGTATCCTGGccaacctgctgctgctgtttcccaTGGGAGAAATCAGCTACATCCAGCAGGACCGCCTGGCCAGCTACATCTGGTACTTTGGTGGACTAGGAGGAGGTGGATTGCTGATGCTGTTTCCAGCTGTGGTCTTCATCACTCTGGGGAAATGTAGCTGCTGCTGGAATGAGAGTTTAATGATGTGCGGGTCAGTGTTGGCAGCTGCGGTCGGCATGGTGGGGTCTGGCTACTGTTTCATCATGTCAGGATTCGCCTTGGTGCAGGGCCCCCAGTGCTTCACCTCTTATGGATGGTCGTACCCCTTTGCAGACCAGGGGGGCAGGTATCTCTTACAACCAGAGACTTGGTCACGCTGTCTTCAGCCGGTTCACATCGTAGAGTGGAACgtgactctgctgtgtgtgcTACTGGGCCTGGCCGTGCTGGAGTTCATCATCTGTCTCTTACAGCTGGGAAACGGTTTAGTCAATGCCGTCTGCCGGCCCTGTTGCTACAAGCAGGAGTATAGTCTAAATGCTTAGAtctaaacacacatgcatacgtGTATGTAGACTCACCTGCTGAGAGTCACACACTCGACAATGTATGCATACATACAGGACATTAATGGACACATGCATACGCAGCCTTATTGCCCAGCACCATTTATATGTGTGGGAGTACACCTCAGTCTTACTTAGACAGACCGACCTACAGTACACATGCAGTGTCATGGACACCTGACTGCCACATCAGTATATTTGCTATATTTTCAAGCTTTTAATGTGTCTGTTAAAGTGGCAAAAATCTCTATACAGt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127515 lncRNA upstream 164642 10530696 ~ 10531381 (+) True G94515
TU127434 lncRNA upstream 186485 10507652 ~ 10509538 (+) True G94450
TU127411 lncRNA upstream 282262 10409523 ~ 10413761 (+) False atp11b
TU127406 lncRNA upstream 290790 10339236 ~ 10405233 (+) True G94426
TU127612 lncRNA downstream 202043 10916925 ~ 10940007 (+) False G94598
TU127618 lncRNA downstream 233621 10948503 ~ 10948822 (+) True G94604
TU127624 lncRNA downstream 248666 10963548 ~ 10977065 (+) True G94609
TU127628 lncRNA downstream 281595 10996477 ~ 10997201 (+) True G94613
TU127708 lncRNA downstream 386446 11101328 ~ 11101569 (+) True G94674
XM_039812123.1 mRNA upstream 4937 10681539 ~ 10691086 (+) True LOC120565966
XM_039811765.1 mRNA upstream 27137 10653639 ~ 10668886 (+) True slc25a24
XM_039811026.1 mRNA upstream 68984 10617375 ~ 10627039 (+) True henmt1
XM_039811027.1 mRNA upstream 68984 10617375 ~ 10627039 (+) False henmt1
XM_039811028.1 mRNA upstream 68984 10617581 ~ 10627039 (+) False henmt1
XM_039812280.1 mRNA downstream 8020 10722902 ~ 10731305 (+) False LOC120566058
XM_039812279.1 mRNA downstream 8033 10722915 ~ 10733961 (+) True LOC120566058
XM_039812278.1 mRNA downstream 34047 10748929 ~ 10759929 (+) True LOC120566056
XM_039811575.1 mRNA downstream 232050 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039811350.1 mRNA downstream 390259 11105141 ~ 11107198 (+) True LOC120565506
TU127375 other upstream 536216 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 747793 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 792834 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 850042 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 850219 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 202043 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 232094 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 533693 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 714149 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2290694 13005576 ~ 13100445 (+) True raver2

Expression Profile