RNA id: XM_039812280.1


Basic Information

Item Value
RNA id XM_039812280.1
length 3041
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC120566058
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10722902 ~ 10733961 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTTGTTGGTCAGTGACCAGTGAGCAGTCAGCTGAGGGAGTATAAAAATACCCCGAGGGTCTAAAGTCtcagacagactgactgacagctgtcagTTGCATGCACTGTTTGTCTTCATCATTATTATCCTCTGGATCACCGAACAGAAATAGAGACTCATCTTCCTCCTTGGCAGTTTAACTTGTAGTTGGCCAAATGCATCGGTTGTGGTTAAGTGGAGCGTTGCTGCTGTGTTGGGCAGCAGTATGTGTGTCTGGGATGAGGAGAGAATACTTCCTTAAGATAGAAGAGGTGTCTTGGAACTATGCCCCAAGCGGGATGAACTTAATTCAAAACCGTACTCTGCAGGAAGATGAAGAAGCTGCAGTGTATTTAAAGAGAGGCCCCCAGCGTATCGGCTCCACCTACAAGAAGGCTGTGTATAAGCAGTACAGCGACGCCACCTACAGGACTGAGGTGATAAAACCGAACTGGCTGGGCTACCTTGGACCCCTGTTGATGGCTGAGGAGGGAGACACATTGATCGTCCACCTGAAAAACATGGCAACCAGACCTTACAGCATCCACCCGCATGGATTGAACTATAGCAAGGGAAATGAGGGAGCCCTATACCCAGATGGTACTGGTCCAGAGCTGAAGCGTGACGACTCAGTGCCTACTGGTACAACATTTACCTATGATTGGACCCTCCCAGAGAGACAGAGCCCAGCATCAGATGACAGCAACTGCGTGACCAGATTCTACCACTCCCACGTGAGCCCACCAAAAGACATCCCATCAGGACTGATAGGACCCCTCATCACCTGTAAGACAGGAACTCTGGACTTGCATGGAGACAGGTCAGGAGACTATCTGTTCGCTCTGCTCTTCTTGGTGTCAGATGAGAACTCCAGCTGGTACTTGGATGACAACATCAGGACGTACATTAGGGCTCCTGCTGCAGGCCTGAAGGAGGATGCAGATTTCATTGAGAGCAACAAAATGCATGGTATAAACGGTTTTCTGTATGGTAACCTGCCTGGACTGAGCATGTGCCAAGGCAACAAGATCCACTGGCACTTGATTGGCTTAGGCAATGAGGTGGACATGCATTCAGTTCATTTCCATGGCCAGATTCTGACCCTTCAGAaccaccacacagacacagtcagtCTTTTCCCCGCCTCCAGCATTATGGCTGAAATGATGGCTGACAATCACGGAGACTGGCTGCTAACGTGCAACGTTAATGACCATTTCATGGCTGGAATGCAGGCTATATTTGAGATCAAGAAGTGTTTCCCCAACGTCCATAAGCCCCGGCCACACGGTGAGCTCAGACCGTTCTTTATTGCTGCTGAAGAAGAAGTCTGGGACTACGCTCCTACGCCGCCTACTGATGGtgaagCAGACATGTTTGTAACCAGAGGACCAAACCGTATTGGAAGCCGCTATAAGAAGGTCCGCTATGTGGAATACACTGACATCACCTTCACAACAAAGATGCTACGCAGCCCAAAGGAGGAACACCTTGGAATTCTGGGTCCTGTGCTGCGAGCTGAAGAGAAAGACACCATCAAGGTGGTGTTTAAGAACAAAGCCAGCCGGCCTTATAGTATACAACCCCATGGTGTTGAGTACAGTATCGAACAGGATGGGACGCTCTATCACAATGAAGTAGAAGAGACCCATACAGCGAAGAAACTGCGGGAGCTAAAGAAGGAACCAAGAGTGCTGACCCCTTCCCCAGCTGCTCTGGTCAGACCTGGGACGATGCACACCTATGAGTGGACGGTGCCAGCGGGTGCTGGTCCAGTAGAAGGGGAGGCTGACTGTCTGTCCTATCTGTACTACTCTGGAGTGGACCCTGTTAAAGACACCCACTCTGGACTGGTTGGACCGCTCCTTATCTGTCGACCTCGATCACTTAAAAAAGGACAACAGAAAAACTACGACAAAGAGTTCCACCTCATGGCCACAATATTTGATGAGAACCTGAGCTGGTATCTGGACGACAACATTAAGTCCCTAAGCACTGTTCCCTCTGCTGTTAACAAGGAAGATGAGGGCTTTATAGAAAGCAACAAGATGCATGCCATCAATGGCTTTGTGTATAGGAACCTCCCAGGCCTGACCATGTGTAAGGGGGATAAAGTATCGTGGCACGTGTCAGGACTGGGTTCAGAGACGGACATCATCAGCCTTTACTTTGAAGGAAACCGCTTCATCTACCGCCAGAACAGACGAGACACCATTAATGTCTTCCCTCACATCTCACACACTGTCACTATGGAGCCAGACAGCATGGgtcaGTTTGAAGTGGTGTCAGCCACAGTGAACCATTATCAGGGTGGGATGAGAGCCAACTACACGGTAAAGAAATGCAGCATGCTTCAGCGTCAGGGTGAGATTATGCTTCACTCAAAAACCTATTACATCGCTGCCATGGAAATGGACTGGAACTACTCTCCAAACCGCACTTGGGAGGCTGAGATGTACCCTGGTCTGGATAACCCTGCTCATGTCTACCTGGACCAGCAGGGTGGGTTTATAGGCCCCCGTTACAAGAAGGTGCTCTACCGCCAGTTCACCAATAACAAGTTCACCAAGCAGGTGGAAAGAACAGCCGATATGGAACACCTCGGCATTATGGGTCCAATGATTCATGCTGATGTGGGAGACAAGGTGACAGTGGTTTTTAAAAACATGGCATCCAGGCCTTATTCTATCCACGCACATGGAGTCAAGACAGAAAACCCAGATGTTCATCTCACCCAACCAGGTGAGACTCACTCCTACTACTGGTACGTTAATAAGAATACAGGACCAACCCCAGAGCAGGAAGAGTGCTCTGTGTCAGCGTACTACTCCACTGCTGATGTTATCAAGGACCTGTACAGCGGTCTGATTGGTCCGTTGGTGATCTGTCGTCGTAGTTGGGGCAGGACTCTTGGTATGAAGAAGGAAGTAGAAGAGTTTGTGCTGCTTTTCCTGATTTTTGATGAGAATTACAGCTGGGGGAATGGCCCAGTGGAAACACCTTATTGATGTGAAGGCCAGT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127597 lncRNA upstream 11406 10711203 ~ 10711496 (+) True G94587
TU127515 lncRNA upstream 191521 10530696 ~ 10531381 (+) True G94515
TU127434 lncRNA upstream 213364 10507652 ~ 10509538 (+) True G94450
TU127411 lncRNA upstream 309141 10409523 ~ 10413761 (+) False atp11b
TU127406 lncRNA upstream 317669 10339236 ~ 10405233 (+) True G94426
TU127612 lncRNA downstream 185620 10916925 ~ 10940007 (+) False G94598
TU127618 lncRNA downstream 217198 10948503 ~ 10948822 (+) True G94604
TU127624 lncRNA downstream 232243 10963548 ~ 10977065 (+) True G94609
TU127628 lncRNA downstream 265172 10996477 ~ 10997201 (+) True G94613
TU127708 lncRNA downstream 370023 11101328 ~ 11101569 (+) True G94674
XM_039812277.1 mRNA upstream 8020 10696023 ~ 10714882 (+) True tm4sf18
XM_039812123.1 mRNA upstream 31816 10681539 ~ 10691086 (+) True LOC120565966
XM_039811765.1 mRNA upstream 54016 10653639 ~ 10668886 (+) True slc25a24
XM_039811026.1 mRNA upstream 95863 10617375 ~ 10627039 (+) True henmt1
XM_039812278.1 mRNA downstream 17624 10748929 ~ 10759929 (+) True LOC120566056
XM_039811575.1 mRNA downstream 215627 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039811350.1 mRNA downstream 373836 11105141 ~ 11107198 (+) True LOC120565506
XM_039811528.1 mRNA downstream 491217 11222522 ~ 11237901 (+) True ccdc17
XM_039811329.1 mRNA downstream 517129 11248434 ~ 11304093 (+) True LOC120565497
TU127375 other upstream 563095 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 774672 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 819713 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 876921 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 877098 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 185620 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 215671 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 517270 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 697726 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2274271 13005576 ~ 13100445 (+) True raver2

Expression Profile