RNA id: XM_039812291.1


Basic Information

Item Value
RNA id XM_039812291.1
length 3562
RNA type mRNA
GC content 0.49
exon number 24
gene id axdnd1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14949168 ~ 14961237 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCCAGTGCTGGACACCAGAGGTGACGTTAGCGTAAAGTCGGGGGGAGGCTGGCTGCTTAGCTAAGCAGATGtgGCAGAACTGAATTTTCAAGTCCCAGCAGAGAGCATGAAGACACAACCTCCTCCTGTCAACAACCACATCATCCCAGATGAACTGCTGGTCAGCCTTACCTCCACTGTCTGCAGCAGGAGCACACTGGGGCACACTGCACACCATCGGCACTGCAAGGGATGTGGAATCAGACGGCCGGATGCAGTCTGGCATCACCAGCTCGGACGCAAGAAATACAAGTTCTTTCTGGAGCAGCCAACGTCCCTGACTGGAGCCGGCAGGGATATTTCATTCCTGTGCGATGCTGTGGTAACCCAGAGGAAGACCGCACCCCTCCCACCACTGACTGAAAGGAGTGGCATTGGAGACATGCAGAACTTGAGTGTCTCAGAAAGTCTGATCCCAGAAGAATATCACATTGTGAAAAACAAAGGGCTGCGGAGCCTTGAGTTCTTTGAGGATGCGTTCACAGTGCAGCTACAGGATGATGAGCAGAAGCTACGGGTCTTTCCTTCACtGAGGCCCAGTGGCAGACTGGAAGTGGTCCAATTGATGAGGATGATGGACGACATGCTGGAGAAGGCCGGAGTGGATCAGCAGAGTGAGGAGCTGACAGAACTCTCCCAGATGGAGGGTCTGCTGGAGCTGGTGCAGGTTGAGCAGAACATCTACAACATTGTATTCCATGAACTTATCAGGCAGGTCAGCGTCGGATGTGCTGAGAGAGGACAACTGCTAGCCAAACTCAGACAGCGCTACCAGTCCCTGCTCGAGCGAATCCCCAGCCGTCTGAAAGCTCTACACACTGAGACAGTGGCGCAGCGGGCTCTGGACCGCCGGCTAACTGAGGAGATCCACCACATCAAGACATCCATCCAGCACCTCAACATGGAACTGTCCAGAATCAGAGACCATGATGCCTTTGTTTCCCAGCAGGCAGAGCGCGCTCACCTGCAGCTGGCTGGGGCTCTTGAGCAGACTCACACCAACTCAGAGTCAGTCCCTCGTAGTGTGGTCCAGGGTTACCACGAGCTGTATGAGCTGCAGAGGGGTCGCCTTGAGGCTCAGTTGCTCCAGATGACTGAGGAGAGAGACTGCTGGAGCCAGCTCACCTTCTGCCTCGCCCTCAAGGTGATCAGTGTGAAGAAGCTGCAGCTGATCAGTCGGCTGCATATCATCGAGCAGAACTGGTTCAAGACAGCTGAGCACTGCAGCCTTTACCTCACTCTGAAGGACACAGAGGACCTGAATATCATCATGGAGCTTAGTGACTACTGGAAGGAGCAGCTGACTGCTTTCATGTCCCAGCTGAAGAAGACTGAGCATGCTCAGTGTGAACAGATCAGTGCAATCCAGCAAGGCATCGCCAAGTGGCTCGCCTTCTGCACCACACAGAACAAGTGTCCTACCCCAAAATATGAGAAAGCTTCATTGGAAAAGATTCATGCTGATTTGAAGCAGTGGTCAAATACATTGGCCCTCCTGTGTGACCACTACCAAGGTGAGAAGCTGCTTTTCTGCCAGCAGACACTGAACGAGCTTGGCCGTGTCCAGGAAAGATGGCTGAATATGAGCCTTGAGCTGTTCAGAAGACACCCTCTTCCTGATGGTGAACCCCGTGAAGGCCAACAGGCCCTAAGAGAGCTGGAAAGGGTCCTATCTGATCTCCTCAAACAGCTGGACACCCAGATCACTGGAGAGAATGGGATCCACGGAGAGATCATGTCACTGCTCGGGTTGATGGAGTCCCGAATTTCCAAGCTTGGTGCAGTGATTGGACGGACAGAGATGATGTCTATCTCTGACTGGCTGAAGATGGAGAAGGCACTGCGCGATTGGCAGAGTTTGGCTGAAAAAGCCTTTCCGAACGTCTccagcacaaacacagagaacgaaaaggacaaaaacaagcTTGACATATAtacagacacagaaaaggtGTTAGACAATGTGCAGCAGTTCATAACCAGCTTGTCCAACTTCACTGATGGTGAGAAGCAGAGACTTAGTGAGGAGGTCAGTTCTATTCACATGGCTCAGACCCGCTGGATGTTGGAGCTGTTGCTCCTCATGGTACCTGACCATAGCGAGGACCACAACCAAGAACAGGAACACCAATACATTACAAACATCTCACTACAGACACTGGATGAGGATGCCAAGATGCTGGCTGAGAAACTGAaccttttttccacatacatCAGCAGCTCTTGCAAACTGATTCTGGAGGAGCAGATTCTGCAGAATTCACATGACGTAGAGGCTGAAAATGAGATGAATGAGTGCAAAAAGCTACAGAGGGAGTGCATTGATTTGGTGGAGACCTGTATAATCCTGCGCTCAGGATTGAGAGGCGGTCCTGTGGAGCTGCCCGTCCGACAGGCTGACCCCGGCTCCAGCAGTGATGTCCCTGTCTCTCCAGCAGACAGCATGcagggggagctaACGGTTTGTGAAAGCCCAGTGGTGAAGCTGATTAGCTATGATGGAAACATTACACAAAGAAAGCTGGGAGAGAGCAGTGTCCACCTGAATGGGcctgAGCTGGTTGTATGCCCAACAACAGAAGAAGCCCAGAAAGCTTTTAGTGATCTGACCACGGTAGGATTGCTGCAGCAGGAACTGCAGGATTCAGAGCTGCGGGTCCAGAGTACCGAGCAGCGAGCACTGAAGGCTGAGGAAGCCCTGCAGTCAGCGTTGGAGAAGATTCAGGATCTGGAGAGACAACTGCAGGGTCGGTCTAGTCTGGAGCCCAAAAGAAGTGAAGagaaaaagaaaaccccACCACCTTCCCCACCACCAGTAACACCCCCAGCTCCTCCAAAGATAACCGCCTCTGAAGCCAAACAAACAAGCAGCACCAAAAAGAACAAGAAACGGTGATCTGACATGGGATCAGGAGGTGTTACAACTTCTTATGTATGTATGGGACTGTCCAGTTATTTGTAAAATCGCTTTTAGGGTTTTacgtttcatttgttttttttgtgttgttgcacTCCATCACAATCACATCCATAAGGGAAAGGGTATTATGACTTCTGATGCACATTACCAACACATGTACTGTCTCAAAAGTTTATAAGATAGTGTAGCACACAGGAAGAAAAACAACTAGAATAACCAAGAAGCATCATTCACCAGCACTACCTTTCAAGTATAAGATATTTCCAGTATCGGGAGGTTGTCCAATATTCAGACTGCTTGGCTGTTGTATGAGAATGGATATAGTGATGTTGCCATTTATATAACGACATGCTGTGGTTTTGTTCAACCTTGTGATATTGGTTTTTGTTTCCTtccaaaaaataaagtttctGCATTACATTTGAAAAAGTTAGACTTTTCTGGACCTTTATTATCAAAACATGGAAATTGTCAAATTGTTACACAAACCCAGTTACCCTACAGTAGATGCTCTCAAACCCTTCATAGCGAAAGCACATCAATACACTTATTATGAACTCTTATTTTAAATTGcacttaaataaaaaatcatttaGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128812 lncRNA upstream 17322 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA upstream 17322 14931069 ~ 14932081 (+) False G95496
TU128807 lncRNA upstream 23800 14923952 ~ 14925603 (+) True G95493
TU128809 lncRNA upstream 23800 14924461 ~ 14925603 (+) False G95493
TU128802 lncRNA upstream 25567 14922981 ~ 14923836 (+) False dennd1b
XR_005640228.1 lncRNA downstream 260896 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA downstream 270134 15231371 ~ 15268185 (+) True LOC120565370
TU129007 lncRNA downstream 335047 15296284 ~ 15297193 (+) True G95640
TU129053 lncRNA downstream 426761 15387998 ~ 15389142 (+) True G95681
TU129093 lncRNA downstream 513357 15474594 ~ 15478157 (+) True G95710
XM_039812295.1 mRNA upstream 25558 14810370 ~ 14923845 (+) True dennd1b
XM_039812296.1 mRNA upstream 29776 14810370 ~ 14919627 (+) False dennd1b
XM_039812297.1 mRNA upstream 29776 14810370 ~ 14919627 (+) False dennd1b
XM_039812298.1 mRNA upstream 29776 14810371 ~ 14919627 (+) False dennd1b
XM_039812299.1 mRNA upstream 36518 14810369 ~ 14912885 (+) False dennd1b
XM_039812294.1 mRNA downstream 5029 14966266 ~ 14984677 (+) True tdrd5
XM_039812293.1 mRNA downstream 5305 14966542 ~ 14984677 (+) False tdrd5
XM_039812304.1 mRNA downstream 39932 15001169 ~ 15026319 (+) True fam163ab
XM_039811130.1 mRNA downstream 65774 15027011 ~ 15153577 (+) True rabgap1l
XM_039811131.1 mRNA downstream 65774 15027011 ~ 15153577 (+) False rabgap1l
XR_005640328.1 other upstream 32797 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 35370 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 327990 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1566659 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1729031 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 1359257 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2894400 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2905311 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2907429 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2910473 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile