RNA id: XM_039812306.1


Basic Information

Item Value
RNA id XM_039812306.1
length 2750
RNA type mRNA
GC content 0.59
exon number 16
gene id med16
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 983651 ~ 1009213 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacactgtctgaaTGGACGGTggacagtttgtttgtttgttacacCCGCGGAtattatgttatttatatatttaatgttcCGTTAAACAGCACAAACTGACTCTATACTTCTTACACTTCCCTTTGGAAAGAAAacggatttatttcagtttgaGCTGCGTCCTTGGAGCTGAAATCAAAAGgagATGGAGTTGGCCTACGTGTGTGAGTGGGAGAAACGTCCGAAGAGCGTCCACTGTCCCTCGGTCCCTCTAGTCTGCTCCTGGTCCTGCAGAAACCTGGTGGCCTTCACCACAGACCTGAAGAACGACTCCGAcgacacagatGTTAGTCACATGATCCACATCATCGACACCGAGCACCCCTGGGACGTTTACTCCATCAACTCGGGACACTCTGAGGTCATTTCCTGTCTGGAGTGGGACCAATCAGgttctAGGCTGCTCTCTGCCGATGGTGACGGCCAGATTAAGTGCTGGTGGATGTCAGATCACCTGGTGAACAGCTGGGAGAGCGTGCTATCCTCGTCTGTGGACGGAGATCCAATCGTAGCTCTGAGCTGGCTACACAACGGCGTCAAGCTGGCGCTGCACGTGGAGATGTCTGGATCCACTAACTTCGGGGAGAAGTTTTCGCGGGTCAAGTTCTCTCCGTCTCTGACCCTGTTTGGGGGGAAGCCAATGGAGGGCTGGCTGGCGGTGACGGTGAGCGGCCTGGTCACCGTGTCGCTGCTGAAGCCCGGCGGCGCCCTGCTGACCGCCAGCGAGAGTCTGTGCCGGCTCCGAGGACGCGTGGCACTTGCTGACATCGCCTTCACTGGCGGAGGGAACATCGTGGTGGCAGCCACCGACGGAAGCAGCTCCTCACCGGTCCAGTTCTACAAGgTGGTGGTGAGTGTGGTCAGTGAGAAGTGTCGTATTGACACAGAGCTGCTGCCGTCTCTCTTCCTGCGCTGCACCACCGACCCTCTGAGGAGAGAGAAATACCCCGCAGTCACACACCTCAAGTTCCTCACCAGAGAGAACTCAgaacagGTTCTGCTGTGTGCGTCCAATCAGAGTGGCAGCATCGTGGAGTGCTGGTCTCTGAGGAAGGAGGGACTTCCTGTCAACAACATCTTCCAGCACCGCTCGCCAGTCGtggggGAGAAGCAGCCAACCATCCTGAAGTGGAGGATCCTGACCACCACCAGTGATCTGGAGCGAGTCTCAGCTGTTGCTCTCCCTAAACTCCCCATCTCCATCTCCAACACCGACCTCAAGGTGGCGTCAGACACAAAGTTCTGCCCCGGCCTCGgTCTGGCTCTGGCGTTTCATGACGGCAGTATCCAGATCCTCCACCGTCTCTCCCTCCACACGATGGGCGTGTTCTACGGCTCCTcgtccaatcagagagcaggagaggagtTGGCCATTAAGCGGCAGCGACCCGGTGGCTCCACGCTCCACTTCAAGGCGCTGCAGTTCTCCTGGACCTCGCTGGCGCTCGCCGGGGTCGACAACCACGGAAAGCTCCACATGCTGCGTGTGTCCCCGTCCATGGGCCAGGTTCTGGAGATGAACACCACGCTGCGCCACCTGCTGTTCCTGCTGGAGTACTGCATGGTGACGGGCTACGACTGGTGGGACGTCCTGCTGCACGTGCAGCCCTCCATGGTCCACAACCTGGTGGAGAAGCTGCACGAGGAGTACATGAGGCAGAACCAGGCCCTGCAACAGgtGCTGGCGACCCGTATCGTGGCGGTGAAGGCGTCTCTGTGTAAACTGTCCACGGCGACAGCGGCTCGAGCGTGTGACTTCCACGCCAAGCTGCTGCTGATCGCCATCAGCTCCACGCTGAAGTCTCTGCTGCGGCCGCACGTCCTCAACACGCCGGACAAGAGTCCCGGAGACAGGCTGGCCGAGATCTGCGCCAAGAACAGCGACACGGaTATTGATAAGGTGATGATCAATCTGAAGACGGAGGAGTTTGTGTTGGACGGTCCCCCCCTTCAGTCTCTGCAGCAGCTCATCCAATGGGTGGGGGACTTCGTCCTCTACCTGCTGGCCAACCTGcccaaccagGGCTCCATGGTGCGTCCTGGCTTCGGCTTCATGCGGGACGGGGCGTCCCTGGGCATGCTGCGGGAGATGTTGGTGATGATCAGGATTTGGGGGCTGCTGAAGCCCGGCTGCCTGCCCACCTTCACCGCCACCTCAGACAACCAGGACAGCATGCAGCTGCTGTTCAGACTGCTCACCAAGCTCTGGCTCTgctcGCGGGAGGACGGCCCCCCCCAGGACCCAGATGAGAGTCTGATAGACGAGTGCTGCCTGCTGCCCAGCCAGCTGCTGGTTCCCAGCATGGACTGGCTGCCCGTCAACGACGGCATCATCGTCCGGCTGCAGGGGAAGCAGCCAATCAGGCTGCAGTTTGGAAAAGCCTCATCTCTGCCCGCGGGGGGCGCCGTCGCTGCCACAGCACCGCTGGAACTCTTcaccaggagtCCGGGCTCTCAGAAGATGGATAACCTGCGTTGTGTACATATGGGCGTCTGTCCCACTGAGGAGAGCAAGGCCTGCACCAGgtgcggcTGTGTGACCATGCTCCGTTCTCCTAACAAAACGAACGCCATGAAGCAGTGGGAGCAACGCTGGATCAAAAACTGTCTGTGTGGAGGTCTGTGGAGGAGGATCCCCCCCACACTCACCTGAACACAGcgaccccccacacacacactcacctgaaCACAGCCTggacccc

Function

GO: NA

KEGG:

id description
K15159 MED16; mediator of RNA polymerase II transcription subunit 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123971 lncRNA upstream 12130 970873 ~ 971521 (+) True G92095
TU123969 lncRNA upstream 13739 968991 ~ 969912 (+) True G92094
TU123968 lncRNA upstream 18001 964768 ~ 965650 (+) True G92093
TU123925 lncRNA upstream 35938 923297 ~ 947713 (+) True G92066
TU123926 lncRNA upstream 42892 900221 ~ 940759 (+) False G92066
TU123991 lncRNA downstream 36450 1045663 ~ 1046099 (+) True G92109
TU123999 lncRNA downstream 38323 1047536 ~ 1062632 (+) False G92111
TU123998 lncRNA downstream 40990 1050203 ~ 1062632 (+) True G92111
TU123945 lncRNA downstream 93979 1103192 ~ 1301580 (+) False G92071
TU123953 lncRNA downstream 96936 1106149 ~ 1129822 (+) True G92078
XM_039811565.1 mRNA upstream 28415 886359 ~ 955236 (+) True grin3bb
XM_039811566.1 mRNA upstream 28415 891578 ~ 955236 (+) False grin3bb
XM_039811564.1 mRNA upstream 129153 832241 ~ 854498 (+) True wdr18
XM_039811713.1 mRNA upstream 175412 784199 ~ 808239 (+) True stx6
XM_039811799.1 mRNA downstream 1534 1010747 ~ 1025143 (+) True plppr3b
XM_039811451.1 mRNA downstream 213120 1222333 ~ 1228679 (+) True trmt13
XM_039812460.1 mRNA downstream 313192 1322405 ~ 1380914 (+) True LOC120566171
XM_039811453.1 mRNA downstream 528786 1537999 ~ 1574777 (+) True LOC120565564
XM_039811454.1 mRNA downstream 616361 1625574 ~ 1630680 (+) True LOC120565565
TU123859 other upstream 224675 722373 ~ 758976 (+) True G92019
TU123860 other upstream 224675 755595 ~ 758976 (+) False G92019
TU123696 other upstream 389774 580807 ~ 593877 (+) True G91903
TU123666 other upstream 417185 509141 ~ 566466 (+) False G91887
TU124034 other downstream 159608 1168821 ~ 1170046 (+) True G92146
TU124050 other downstream 193674 1202887 ~ 1204046 (+) True G92157
TU124060 other downstream 211597 1220810 ~ 1224808 (+) False trmt13
TU124057 other downstream 212160 1221373 ~ 1224808 (+) False trmt13
TU124067 other downstream 232174 1241387 ~ 1256194 (+) True G92169

Expression Profile