RNA id: XM_039812315.1


Basic Information

Item Value
RNA id XM_039812315.1
length 2495
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC120566074
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9067178 ~ 9070676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTTCAACAGGCTTCCATTTTCAGTTTCAGGGGCTATCAAAACACACAGTGTGCAAAGGTCACAATTTGCCTATCACAGTAAACTGTTACTGTCATTTGCATCTGTGCTGCCACACTAAAAATAATGTGAACACAGCATGCTTTCAGCCTGTCTGTTTGGCTTATCCAGTCAGGAGGAGGCAAGGATCTGCAATAgcagaagggggaaaaaaaagcagagagaCATAATAGGGAGTAAGGCATCAAAAGGGGGGAGGCATACATGCAGTACAGTGTGAGTATGTGTTGTTTCTAACAGCGAGGTAGGTGGAGAGGAGgaacaggagaaggaggaggaaggggtgCTTCCTCTTCAGGCTGAGCTGAGCTGCTGATGTATCCCAGCAGCCCTGGTCAATAGCAACAGGAAACCTTAGTATAAAACTCCGCGTCGTGGGGGGAACCCTCCTAAGTATCTCTCAGCCGCAGCATGACCAGGACCGAGAGCCTGAGAGTGTGGACTTAATAAGACAATGCCCAGCCTAATCGTCGAACCACTCAACACACAGCACTTCATCATGGACCAAGATGACAGGAAGAGAAACAAGAACATTGGAAAGAACTTCATGTGCCGTCTCCAGTGCATGTTCTCACACTCGTCGAGCTCTGAGAGCAGGCTAAGTTTAGAAGATACCCAACAATGGTCACAGTCACTGGAAAGGCTTCTCGAGTCTAAATATGGAATGGCCACTTTTCGCAACTTTCTCAAATCCGAATACAGCGATGAGAATATTGAGTTCTGGCTCACCTGTGAGGACTACAAGAAGATCAAGTCTTCATTCAGAATGTCTTCAAGAGCCAAGAAGATTTATGAGCAGTTCATCAAAGCAGAATCTCCTAAAGAGATCAACATCGACTATCACACCCGAGAGCAGATCAAAAGGAACGTCAAGACTCCCACCATACACTGCTTTGACGACGCTCAGAAGATAGTTTACGGGCTGATGGAAAGAGACTCGTACCCGCGGTTCCTCCGCTCGGACATTTATAGAACTCTCCTGGAAAACCTTGCCGCCGAAGCCACGAAGGGATGAAAGCACgctcagggagagagagagagagagagagagagagagagagagaaaaagaacataaaaccCTTAACTGGAATGTTTGAGCTCCTTCAGGAGGAaggaccgacaacaaagaaggaaggagggtCGACCCAGCGCGCTACACGGACACATACAGAGGCCTCGCACCTCCGCCGTTGTCACTCCAGAAGCTAATTGTGCCTTAGTCCCGTCATGGGAGGATCCCAACACTGAGCATGTCACACCTTAAGGACTGTGTGAGAAGAAGACAAAATAAACACGACCCtttagtgtgtgtttgcactGGATAAGTCTATATACGCGGGAGAATGAGCCACTTTTTGACAATGAATGAATCAGTGAGGTGACTGACGCCCGCTCTGACTGTGGAGCTGCGTAAGCAAACTATGCAGCAGACCTCCTTTGGCCTTCTTTGCAGaagtgtttcctgtttcctgtgcaGATTGAGATAGAGGATGTAAGATACAACGGTCACACTCGATTAGTTGCGTGTGTCTGGGttcgcgcatgtgtgtgtgtgtgtgtctgagagagtGCAAGTGAGTATTTAGTTGTAGCTTTTAACTGCCATTGAGACAGGGTAGGCTGTCCCAAAAAGAGTTGGACAATTATCTAATGACAGCACTAAGGCAGACAACAAATCCATAGTGGACAGAGGACTTAATAGCGATATGTCATCCTTAGTAAAGGGTTGCAGAAGGCCGCTTGGTTCTGCAAGAGGCATTCTGGGACACTTTAAAAGGagatttttctccttttttatgATTGgaccgttgttgtttttttcttttgttttttttggttttaaacTGATGTAGATTTAAACTTCTATGGGTGACATTTTGTGCCACTATTCAATATCTTTATCCTtctcaaagaaaaaaatagtagcagtttattttatttcaatagAAATATGgattacatttctttctttttttttaactaaaaacaTAATCTTGCACATTTTTTTGCGTGGAATCTGAACCAGAAGTTCCCTGTTTACGGCCAGTGGATTCTAATTGAATTCCTCAGCACAAGACTACTGGCCGTTAACTTAGTCAAAACCAAATTCTTACAGCACTGAAGTGTCAAGAGTTGTGATTTAATGTATTTAACTATATGAGTGGAATTATTATAGAGATAGGATGTTTCACGTTGCATGATAGGATGGTAAAACTCCTTGTATAGCTTGAGAATATGCCTTATTACTGCTTTCCAAAGAAATGTTGTTTGAATGTATTCTTTGGGGTTTATAGTTAAGTTAACTTAAAAGTTAGACAGTgtattatttattgttatttgtcaCCATTTGAGTACAACATTTGTTGCAGTGTTGAAGTGCTTGTTAAAATGTTAGTGATTTGAATGACATTAAATTATTGTATTAATAATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127026 lncRNA upstream 65476 9001456 ~ 9001706 (+) True G94169
TU127024 lncRNA upstream 66722 9000163 ~ 9000460 (+) True G94167
TU127009 lncRNA upstream 413758 8653056 ~ 8653424 (+) True G94153
TU127007 lncRNA upstream 451548 8614911 ~ 8615634 (+) True G94151
TU126923 lncRNA upstream 787210 8278804 ~ 8279972 (+) True G94075
TU127056 lncRNA downstream 19152 9089828 ~ 9096292 (+) True G94192
TU127065 lncRNA downstream 76486 9147162 ~ 9168877 (+) False G94199
TU127068 lncRNA downstream 98643 9169319 ~ 9169757 (+) True G94201
XR_005640321.1 lncRNA downstream 364045 9434721 ~ 9437621 (+) True LOC120566015
TU127117 lncRNA downstream 413327 9484003 ~ 9485965 (+) True G94232
XM_039810130.1 mRNA upstream 5146 9057341 ~ 9062036 (+) True LOC120564878
XM_039810246.1 mRNA upstream 33502 9021517 ~ 9033680 (+) True LOC120564973
XM_039812447.1 mRNA upstream 852682 8208453 ~ 8214500 (+) True rgs4
XM_039811516.1 mRNA upstream 1162036 7896145 ~ 7905146 (+) True LOC120565614
XM_039810957.1 mRNA upstream 1177005 7880460 ~ 7890177 (+) True LOC120565294
XM_039810147.1 mRNA downstream 10183 9080859 ~ 9083857 (+) True LOC120564889
XM_039812203.1 mRNA downstream 313829 9384505 ~ 9543535 (+) False LOC120566011
XM_039812202.1 mRNA downstream 313830 9384506 ~ 9543535 (+) False LOC120566011
XM_039812205.1 mRNA downstream 313830 9384506 ~ 9543535 (+) False LOC120566011
XM_039812197.1 mRNA downstream 313832 9384508 ~ 9543535 (+) True LOC120566011
TU126920 other upstream 812607 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 821361 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1161935 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 1716595 7349810 ~ 7350587 (+) True G93938
TU126420 other upstream 2698828 6354897 ~ 6368354 (+) False rhpn1
TU127064 other downstream 76486 9147162 ~ 9159695 (+) True G94199
TU127128 other downstream 481620 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 501622 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 746945 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 774073 9844749 ~ 9845804 (+) False LOC120565620

Expression Profile