RNA id: XM_039812317.1


Basic Information

Item Value
RNA id XM_039812317.1
length 5657
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC120566075
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11311738 ~ 11356871 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAAAGCCTGGAAAGAGGGGTTTTACAGGACAGTTCTCCTCCTGTCTGAAACCTCATTTTTAAACAACGGATTTAGCTCTTGTGTTGCCTTTTAAACCGGCTGATTTCCATAATCATGAACGGGTAGTCTGCGCGTGGATCTACGCCGACTTTTACTGACCGACACCTGCACACTCTCtatctctcctttcctctcttttgtCTCTGACATCTCTGCAGCTCCCAGCCAGCAGCGCTGGAAGAGGAGGGGGTGTACCTGACACCTACAGCCGCGCGTCGCAGCTCTCCTTCCCCCGCAGAAACACCCAGCAGGACTCGCCCGCCACGGGTGCCTCCTTCCATCGCCAGGTTGTCCGTGTGCAGTTTCAACAGGGAGGGGGGGAACACGGCTTCTGCTGACGGACTGAAAActctttaaaaatatataaaaaaaaaaattaaaatagcaACAACACATTGAAGACAGGGGGGCTTCGAAGAACTCCTGCTTGATTCACTCGGACCAGAAATCTTTAGGATTTTCTGACTTGACTGTAAGAAAGAAAAGGGACTACAATTGAGAAGATGCGTCCCCcggtgtttctctgtgtgttgctgtgtctgtgtgcagcgCCGGGCCCGGTGGCCGGGGCGGACCGGAGCTGCTCCGACCTGCGGCAGTTCTACACCGGGAAAGGGTTCACTCTGGTAGAGGTCCCTCAGACAGAGATCTCCGGTGAACATTTGAGGATGTGTCCTCAGGGTCCAACTTGTTGTACCAGTACCATGGAGGAGAACCTGGGAGGTCTGAGTGCTCGAGAGACCGAGGGACTGATCAGAGAAGCCGGCAGGTCGCTGCAGTCTGCCTTCAACGCTCTCCACAGGAGCTTCGACACATATTTCACTGAGCTGCACGGTCGCTCTGAGCGCTCCCTCCCGGAGGCGCTGTCTCCTCTCGGCGCCCTGTACTCACAGAACACCCGTCTCTACGGAGATCTCTACACCGACCTGCGACAGTACTACCGAGGCTCCGCTCTCAACCTGGACGAGACCCTGTCTGAGTTCTGGTCCCGCCTCCTGGAGCGCACCTTTAAAATCTCCGCTCCCACAGAgGTCAACCTGTCAGAGGACTACCTCGAATGTGTTGCTAAGCAACAGGAGACGCTGCGGCCATTTGGAGACGTCCCAAGGGACATGAAGGCGAAGCTGATCCGCGCTTTTGTCACAGCCAGGTCGTTTGTCCAGGGGCTGATTGTCAGCGGAGAGGTGGTCAGGAAGGTCTcacagGTTCATTTGAGTCCAGAGTGTATGAAGGCCCTGATGAAGCTGGTTTACTGCCCCCACTGTCACGGCATTGCCTCCGTCAAACCATGCTCCAACTACTGTTCCAACGTCATGAAGGGCTGCCTGGCCAACCAAGCTGACCTGGACCCCGAGTGGCAGAATATTATAGACACCATGATCCAGGTGGCCTCTAGTTTCAGCACGGAGCCCAGTCTCGATGTAGTTCTCTCCTCTATCCCTGCTCGAATCTATGAGGCTGTTCACTTCCTGCAGGAAAACATGGACACATTCACAGCAAAAGTGTACCAGACATGTGGTACTCCAGGTGAACCAGGAACAGGAAGTCCCAAACTTCATGAGCAAAGGAAGAAGAGCGGCTCCCTAACCGCATCAGAGTACAAACCCTCTCCAACTGCTGGGCTCAGACTGGAGATGCAgGTTTCAGATCTGTCAAGTAAGCTGAGGGAGATGCGGCAGTACTGGACCCAGCTTCCTGTGGCACTTTGCAGCAAACTGGCAGCAGGAGGCGCCGGTCAGGATAAATGCTGGAATGGCATTACAAAAGCTAGGTACCTTCCAGAGGTGATGGGTGATGGCTTGGCCAATCAGATCAATAACCCAGAAGTAGAGCTTGACATCACAAAGCCAGACATGACCATCAGGCAACAGATCATGCAACTCAAAATCATGAGCAACAGGCTGAAAAACGCACTGGAGGGCAACGATGTGGACTTCCAGGATGCGAGTGACGACATTAGCGGCTCAGGAAGCGGGATGTGCGTAGGTGGTCTGTGTCCTCGGAACAGACCGGGATTGTATGCCTACTCGCCAGACAACAACCGAGTCAGAGGCACAGCCACGTCTCAAACACGCATCTGTGGCCTCCTACTCCTGCTCCCACTGACCATCCTGCTGCTTCAGCGATGATGGACCGCAGCTGCCTCAAATCAGACTCTAAGTCTAGAGGAGGGCTGAACCACGCGACGGACAAAAAGGGGTTTGGTGGGGGGGGAAAGATTGGAAGGTAAATTtgccaaaaaatgaaaaagacatCTTGGGGGAATTAATGGACGACATTTTATTTGACCAAGAGGAGCAAAATTGACAGTGACAATATTCTTTATTTAGTTTTGCTCAGTTTTAATGTGTCTTAGTTTGGGTGTGATTCAGTTTGTTGAGCTGGTTTCAATGGATTGTTAGAAGAAGACGGAGATGAGGAAggcgaagaagaagagaatGATGGCTGTTGATGATGAAAATAATGATGGGGATATTGACAATGATTTATTGACACTTTAGCAGATCCATTTAGCTCCAGGTTCCAGTTAGCAGGCGGCAGAgctcagtgaaaaaaaaagtttggttcCCTGATATGTGGTGCGTTCAACaaggcttttttttcttatttttttaactggaGTCGAGGTTGACTACCTTAACAAACATTGTGTAAGTTGTAAATGTTTGTGTACATTAGCTTAAAGACTGGCACCATATTGAGCCATGAATGTACAGTGTAATACTATATTGGCAATGAATCTCCCCATAATCTGGGATGTAGTCGTGTGTTGGCATAAATGGATACATTCAGTAggatttgtttaaaatattgCAGATAAATTATCACACATTGTCGTATGAGATGTTGTGATTGCAAGATTTTACCTCACTTTTACTGTATACCCTACCATTTCCAAGGAAAAGGGAAATGACCACCTTTTTAACAACTCATCACCTTAAGAAAACAAGCAGTGTCATCAAAGCACTTGTAAACAAGCACAGACAAGCAGTTTCCTTAAATCCTGTAATTTATCCTGCAGTGAAGACAGAAAACTGCACATTATTCTTACACTTATGGTTGCAATAACCACAAAAATCTCCACAGAGAACATTTCATGACACAGTAATTTTTAGAGAGGACTCCTTGTTGAACGCACACCTGCGTTTAGTAACTTTAAATTGAGTCTTAGAAGCAACACAGTGGCTGATATACAGTAGGTCAAACCAAAGCACTTATTAcactgaaattttttttttcttttacattttttaacagcAGACATCGCCCAGAGTATGTTTAACATTTGTGATGACCCTTGTGCCAGGTTTTGTAActgcatatttaaacaaaaaaaagcatcagtaagaaaaaaaaggtcttgTGCATACAGTACAGGATATGTGCAGAATATTGACAACATGTATACATTTACCTGGTGATACATACTGTAATTTACTCGGCATGCCTTTCTTTCAGTCTACACTACTATACTGATACATATGGGACCCCTGATTCACATAAGtctcttgcacacacacatttacacacactggGGTTGTGTATTAAGCTGATTTTTATTCATCAGTGTATTTAATCAGACATTTCATTCATTAAACGCTGTTTGATTGTGGCAGTGGATTTTGCCATGCACAATTTCATTTGGGTATTGCTGATTAGCATCCATTAACAAGAAGCTAGATCTTTATTTAAAGGGACACtccaccaattttacacatcaaagtcaAAATTGTATTAAAgtcctctgtggctctggatGGAGCTTTCTAATGTTTGAGGAAAATAAGCCTGAGGATgtcatagtgatgtcatcagcTTGGTCTTGGAGGCTAGAACTTTATAACAGACAAAAACTGGGGGCATCAGGTTTGAAAGACGTGGGTGTTTACCAGGCAGGGAGGATCAAACAAAATGATGAGAGTTACGGCAAATATAGGATCTAGTGTTTACGGAGCTTGACCCATTATtagggactaaaagtcaggatatctctaGGGATGGCAATCTCGGTCTGTCTGTTGGACCACCactttgatccagactgaaatatctcaactatcTATCAGATGGATTGCCATGTTCCCTGCAGGATTCATTCGTATCACTTTGGTGATTGCTTACCTGTTCATCTGGtgcatcaggtcaaaattttaaTGTGTCTAATACTtgggtttatgaccaaatacctgctaaactaatgacattcccatcagcctcagctgtacgtAAAGTAAAGGTAAACTAAAAtgatgaacatggtaaacattccACCTGCTTGGCATCATTCAGTATGTTAGCATCGTCATTGCAAGCATGTTATTTTGCTGATGTTCTCcattagctcaaagcaccactgtgccgaAGTACTCACAGAACCACCAGCATAGACTCTTGTTTAAAAGTCTCTTGCAAGTCCCCCCGAACTTTATGGAAGCGCAAAACTAAATCACTGGAGTACCCCTTTAAGGCCTCTATGTTCCTCTCATTGTGAAGGCTGATACAACTTTACAAACATGTACTTTATCTAAGAATCTATCCATTAGCCATAGAGATATGACCAAGCACCAGTTGATCTCGTCTTCACAATGTCTGTTCCTGATGCTCTGTGGCCCGTGGATTTAGTCACGACTCAGTCCCTGACTTTGCTCGTTTTCTAGAAAAACTCAACTTGCCAGCTGCACGACAGCTATTTATAAACATATAACTCTTTGTTACAGGCACTGACAAGCCTCATGTGGCCCTGCTGGAGAAAAACGGGGCCACGTGTTGTGTGTGGGGATGACAATCCTGCACCAGTCAGGGGGTTTCGAGTTaatgaatgatttattttcCTGATGCATACAACAGAATAAAGCAGAGCAGCAGGCACATACACAAAGAGTTCACTACACATTTCTGTCTTTGAATGCTGGAAAGgtcttaaatgttttatttctcaacATCAGTATCTTTGATTAAGAGGACCCGATCTGAACATCCATCTGAattcacccttttttttttttttgcatctcctgaaatgtgtctttttctgTAATTGTGAATGATGTGGAAGTAAAGGTAGAGTCTGAGTTTTACTGAGATGTGGGAGGACACGTGTAGCAGCCACAGTCTACAACACTGTTGATTTGACTTTGTCTAGACATGAGGAAGATTTATCGACTCTCAGCACTCTGAGCTGATGAGCTGTCTGTCCATGACCAACATTTTGAGTCCCCCAGGTGAGAGTTACCTTTGAACAAAAGGTGCCACAACTCTTGCTGAACAAATATAAGAAATGTAACTTAACTCTGGAGACAGCTTAAACTTAATTGTTCTGCTCATGTGGCAGCTTGCAGGTCTAGAATCGATTTTTGGGTCTCCATCTgtggtttaaaaagaaatagaCTCAGTGCTAATGTGTTTTCTTGTAGACGTGGCTAATTTTCTTAACCAATTTCAAATGCCTCCAACTGCTGGCTCTAAGATAAGAAGCATCTCCCGCTCTTTGTCTGCTTTTcacttacacacagacatacatacaactCTTTAAGATACTGGTCAATGTGTACAAGGATGCAATAGCCACTGAATAAAGGTGATTGTTGTCGTGGTA

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127746 lncRNA upstream 71501 11238444 ~ 11240237 (+) True G94706
TU127731 lncRNA upstream 116808 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 135521 11176004 ~ 11176217 (+) True G94690
TU127728 lncRNA upstream 184718 11126756 ~ 11127020 (+) True G94688
TU127727 lncRNA upstream 190054 11121469 ~ 11121684 (+) True G94687
TU127799 lncRNA downstream 219917 11576788 ~ 11577261 (+) True G94747
TU127840 lncRNA downstream 294651 11651522 ~ 11659072 (+) True G94779
TU127859 lncRNA downstream 464780 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 559760 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 804767 12161638 ~ 12196616 (+) False lrp8
XM_039811329.1 mRNA upstream 7645 11248434 ~ 11304093 (+) True LOC120565497
XM_039811528.1 mRNA upstream 73837 11222522 ~ 11237901 (+) True ccdc17
XM_039811350.1 mRNA upstream 204540 11105141 ~ 11107198 (+) True LOC120565506
XM_039811575.1 mRNA upstream 363422 10946932 ~ 10948316 (+) True si:ch211-162e15.3
XM_039812278.1 mRNA upstream 551809 10748929 ~ 10759929 (+) True LOC120566056
XM_039812048.1 mRNA downstream 2819 11359690 ~ 11458146 (+) True LOC120565923
XM_039810317.1 mRNA downstream 116485 11473356 ~ 11490038 (+) False LOC120565022
XM_039810318.1 mRNA downstream 116485 11473356 ~ 11490038 (+) False LOC120565022
XM_039810319.1 mRNA downstream 117053 11473924 ~ 11490038 (+) True LOC120565022
XM_039812473.1 mRNA downstream 158087 11514958 ~ 11523948 (+) True si:ch211-262h13.5
unassigned_transcript_388 other upstream 63091 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 363492 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 370494 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1151931 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 1363508 9947106 ~ 9948230 (+) False ttc14
TU127781 other downstream 72160 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 1648705 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1816154 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 2022527 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 3262487 14619358 ~ 14621413 (+) True G95460

Expression Profile