RNA id: XM_039812334.1


Basic Information

Item Value
RNA id XM_039812334.1
length 1868
RNA type mRNA
GC content 0.45
exon number 9
gene id ebna1bp2
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12056138 ~ 12061625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCGGACCATGTTGGTACACCGTTACACTCCGTCACTTCCTTCCCACGTGAAAAGCTCCATGCGTGAGGAGCCGTACATCCACATTGGATTTATTCGCGTTTCGAACAACTAGATCACATATTGTCATCTTATGATTATCGATAGCAGGACGATGGAgtcagcagaggaggaggaaatgcTCGGACAGGACTCTGAGGAAGACAGCGAGTTATCAGACGACGAGctTCAAGAAGCCTTTGCAAAGGGGTTGTTGAAACCAGGGATGAACGTTCTGGTGGATAAACCCAAAAAGTTTGTCAACAATTTGGAGGGTTTGAAACAGTGCCTTGCTGGTTTCCGCAAAGAGCTTCCCTGGGTGGAAAGGTTGGATATGACCAACCTGCCGGCTGAAGACGTCATTTCCAAAGCTGAAGGGAAAGTTCCAAGTGCGGCCAACGGAGATGTCAATGCAGATGATGATTTCCAAAGAGAGATGTTCTTCTACCGTCAAGCTCAAGCTACAGTTCTAGATGCATTGCCTCTCCTAAACAAGCATGGCATAGCCACCAAGAGGCCTGACGATTACTTTGCAGAGATGGCCAAGTCCGATCAGCACATGCAGAAGATCAGGAAAAAGCTGATCTCAAAGCAGCTGATACTGGAGAAGTCAGAGAAGGCCAAGAAACTGCGTGAGCAAAGAAAGTTCGGCAAAAAGGTCCAAATAGAAGTTATCCAGAAGAggcagaaagagaagaaggcTATGATGACTTCTGTAAAGAAATACCAGAAAGGAATGACCGACAAATTGGATTTCTTGGAAGGAGACAAGAAGAAGGGTAAAGACTCTGCTCAGGGCCCCAAAAATGCAGCAAACAAGAAGGGCCTCAATGCCAAGAGAAAATACAAAGACCAGCGGTTTGGCTTTGGAGGCAAGAAGAGTGGTAAGAAGTGGAACACCAAGGAGAGCCACAACGATGTTTCCAGTTTCCGCGCCAAAGTGGCTAATGCAAAGGGCGGCAAGGGAGGGAAGAAAGGCGGCAAAGGAGGAAAACAAAAtAAACGCCCGGGCAAGTCTGTGCGCAAGAAGATGAAGTCTCGCTCGTAAAAACTGACTGAGGCTGGTCAATAGGCTGGACTTGGACATTGTTTCTAGGCAGAGTTTCCCTCACCTGCTCCCCAGTCTCTCCCCCATATACACCAGGAGACATTTAGGAGAACATGGGcttttcttctgctctttttgTACAACATGCCTTCCGTTGATTGATATGGAGGACGCTTCAAGCCTCATAGAGAGTGGGACGTCCTGCCCTATTGCTAAGGAAGCTTGTGTGAAGGACATGACTGGTGAAGAAAAGGTCTCTCCTTGCAGAAATGGTTAACCCAAAAGTGTACCACATAGAGCTACCCACACCACAAAgtctttttttccaaaaagaGAAACGATTTGAATGTTAAGAAAATGTCTTTTCTTCTCTGTTAGTTGATATAGACCAGTTTTATTGTCTATGGACATATAATTGTCTCTCCATATGCGCATTTGATAAGGTGCTAACTACACCAGCCTCCTTGCCGTCTAATTTTACATTGTGTGCTCTTTGGAGTTTGGtgtattctgttttatttttttctaactcCGCTCCTTGAGCTATGGATTGTCTACCATGTGACATGACATTTTATAATATTGAGCAGCTGTTAGTTTTGCCCTTTCCTATAATAAGATTAGTATGTGATGGCCAAGTCTGCTTTGTATAGACATGTGCAAATGTTGCCCCTTCAAGTGTTTTTCTTAGCTTGCTAAGATGAAAATGCAAAAGGGCAGTTTTGGCGATGACACCTGTATGTTTGTATGATCAACAAATAAATCTGGACATAGGTTGCTCA

Function

GO: NA

KEGG:

id description
K14823 EBP2, EBNA1BP2; rRNA-processing protein EBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127883 lncRNA upstream 136101 11916631 ~ 11920037 (+) True G94813
TU127859 lncRNA upstream 234256 11821651 ~ 11821882 (+) False znhit6
TU127840 lncRNA upstream 397066 11651522 ~ 11659072 (+) True G94779
TU127799 lncRNA upstream 478877 11576788 ~ 11577261 (+) True G94747
TU127746 lncRNA upstream 815901 11238444 ~ 11240237 (+) True G94706
TU127963 lncRNA downstream 100013 12161638 ~ 12196616 (+) False lrp8
TU127967 lncRNA downstream 250198 12311823 ~ 12358019 (+) False lrp8
TU127958 lncRNA downstream 292048 12353673 ~ 12443080 (+) False lrp8
TU127973 lncRNA downstream 292048 12353673 ~ 12441861 (+) False lrp8
TU128119 lncRNA downstream 803390 12865015 ~ 12865841 (+) False ror1
XM_039811811.1 mRNA upstream 41704 11981529 ~ 12014434 (+) True ap1m3
XM_039812475.1 mRNA upstream 75852 11970363 ~ 11980286 (+) True c9h1orf210
XM_039812476.1 mRNA upstream 75852 11974465 ~ 11980286 (+) False c9h1orf210
XM_039810765.1 mRNA upstream 139565 11834555 ~ 11916573 (+) False ddah1
XM_039810698.1 mRNA downstream 107885 12169510 ~ 12353614 (+) True lrp8
XM_039810700.1 mRNA downstream 107885 12169510 ~ 12353614 (+) False lrp8
XM_039810703.1 mRNA downstream 107886 12169511 ~ 12353614 (+) False lrp8
XM_039810704.1 mRNA downstream 107886 12169511 ~ 12353614 (+) False lrp8
XM_039810699.1 mRNA downstream 107886 12169511 ~ 12353614 (+) False lrp8
TU127781 other upstream 611605 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 807491 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 1107892 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 1114894 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1896331 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 943951 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1111400 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 1317773 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 2557733 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 2748743 14810368 ~ 14916606 (+) False dennd1b

Expression Profile