RNA id: XM_039812402.1


Basic Information

Item Value
RNA id XM_039812402.1
length 2040
RNA type mRNA
GC content 0.51
exon number 7
gene id ddx59
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17337825 ~ 17343549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTATGCCAAGAGCCCTGAAAGTAAAGAGACCTGCCCAGGTCTCAGGCCAGGTTTTTAATAAGAAAAGCAAGGTGGGTCAGCAGGAGAAAAAAGATGAAGGCAGTTCAGTGACACCTGTTCAGAAGGAGGAAGCATGTGAAGACACCAAACCACAGGATGAGATAATACAAGCAAGTGGAGAGTCAACAGGTTTGACAGAGAGCTCAGTGCAAGAAGATGGACATACGTCTGCCTCAAGTGATacggaggatgaggatgaggaggaggaaccTGTCAAATCATTCAAAAAGAGCCAGAGATGGCCAGAGCCAGGAGAGCctgtctgtgtgatgtgtggTCGCTATGGGGAGTACATCTGTGACAGCACTGACAATGATGTTTGCAGTCTTGAGTGCAAAGCTAAACATTTGGCCCAAATGGGGATGGGGACTGGGGCAGATGTGTTCAACCGTAAAGACAAAAATGGAGATGAAAGGACTCAACCTCAACAGCCAGCAGTTGACATTGGTGGAGTGGGTGAAAGGGAGACAGGCTATTCCTACAGGGACGATCGGTTCATATCAGGCCTAACCGATGAGCAGGTGCAGAGGATTAAACGGGAGCTGGGCATTGAAACCCAGGGGAGAGATGTCAGGAGACCCATCATTGAGTTTGAACACTGTGGATTTCCTGCCACGCTTAGTGGCAACCTGAAAAAGGCTGGCTATGAGGCGCCCACGCCGGTCCAGATGCAAATGGTCCCTGTTGGTCTTAGCGGCAGGGATGTGATTGCCAGCGCTGACACAGGCTCCGGGAAGACTGTAGCCTTCCTGCTGCCAGTGGTAGTGAGGGCAATAGAGaAACCAGCACACAGTGCGAGTAGCCCTGTGGCTCTCATCCTGACTCCCACCAGGGAGCTGGCCATCCAGATAGAGAGACAGGCCAAAGAGTTGCTGATGGGCCTCCCCAACATGAGAACCGCGCTGCTGGTGGGCGGCATGCCTCTTCCCCAACAACTCCACCGCCTCAAAAGCAGCATCAAAATTATCATAGCCACCCCTGGGCGACTCATTGAGATCCTGAAGCAGAAGGCAGTGCAGCTGGACAAAGTGAAGGTTGTGGTGGTTGATGAGGTCGACACTATGTTGAAGATGGGCTTCCAGCAACAGGTGCTGGAGGTTTTGGAGCAAGTCCCAGAAGATCACCAAACTCTGCTGGCGTCAGCCACCATCCCAACAGGGACGGAGGAGCTGGCTGGCCGATTGGTTCGTGACCCTGTTCGCATTGCTATTGGAGAGAAGAACCAGCCCTGTGCCAATGTGAGGCAGATCTTGCTATGGGTAGAGGAACCCtccaagaagaagaagctgtTTGAGATTCTCAATGACAGTAAGCTGTACCAGCCTCCAGTGGTGGTGTTTGTAGACTGTAAACTGGGGGCCGATCTACTGTGCGAGGCGGTCGCCAAGGTGACAGGCTTCAAGACTGTGGCAATCCACTCTGACAAGAGCCAGTGGGAACGCAACCGCATCCTCCGGGGTCTTCTGGATGGAGACTTTGAAGTGGTGATCAGTACAGGTGTGCTAGGCAGAGGACTGGACCTAGTCAACGTCAGATTGGTGGTTAACTTTGACATGCCAAACACAATGGACGAGTATGTCCATCAGATGGGCAGGGCAGGTCGGCTGGGACACCGAGGAACAGCCATCACCtttctcaacaacaacaacaaacggCTGTTCCTGGAGGTGGTGAAGCGGGTCAAACCCACAGGGTCCATCCTGCCCCCTCAGCTCCTTAATTCACCCCACCTCCATGAGCagcagaggagggagagacaaaagGCCAGACAAGGGTCTGATGACACGCTGGTCACTAAGAACAACCTCATAGACATCATAAGGAAACACGACCGGCGCAAGAAATAGTCTGTTCTCCCAATCATTCCTGCAATAGTGCTGAATTTTTATTtggtaaatgtttattttgtatattgtttattgaaaaaaaattgttttgacATATTCTGAATAAATGGCTTGTGTAATGTAAGACAA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19466 DDX59; ATP-dependent RNA helicase DDX59

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129700 lncRNA upstream 77377 17257393 ~ 17261030 (+) True G96160
TU129594 lncRNA upstream 460326 16877876 ~ 16878081 (+) True G96088
TU129592 lncRNA upstream 566237 16771969 ~ 16772170 (+) True G96086
TU129582 lncRNA upstream 661830 16676207 ~ 16676577 (+) True G96076
TU129581 lncRNA upstream 745225 16592876 ~ 16593182 (+) True G96075
TU129761 lncRNA downstream 79516 17423065 ~ 17423278 (+) True G96202
TU129778 lncRNA downstream 277249 17620798 ~ 17636711 (+) True LOC120564955
XR_005640171.1 lncRNA downstream 279435 17622984 ~ 17636720 (+) False LOC120564955
XR_005640170.1 lncRNA downstream 279435 17622984 ~ 17636720 (+) False LOC120564955
XR_005640265.1 lncRNA downstream 327131 17670680 ~ 17698157 (+) False LOC120565502
XM_039811668.1 mRNA upstream 82859 17236375 ~ 17255548 (+) False si:zfos-943e10.1
XM_039812333.1 mRNA downstream 616 17344165 ~ 17369090 (+) True kif14
XM_039811535.1 mRNA downstream 26553 17370102 ~ 17467510 (+) True LOC120565631
XM_039812403.1 mRNA downstream 405883 17749432 ~ 17753834 (+) True srek1ip1
XM_039811759.1 mRNA downstream 512082 17855631 ~ 17859411 (+) True nppc
XM_039811629.1 mRNA downstream 520788 17864337 ~ 17875307 (+) True ncl
XR_005640269.1 other upstream 997359 16320494 ~ 16341048 (+) False kdm4b
XR_005640328.1 other upstream 2421801 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 2424374 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 2716994 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 3955663 13379398 ~ 13382744 (+) True LOC120564964
TU129832 other downstream 512088 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 522999 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 525117 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 528161 17871710 ~ 17871847 (+) True LOC120566229
XR_005640349.1 other downstream 528729 17872278 ~ 17872411 (+) True LOC120566214

Expression Profile