RNA id: XM_039812472.1


Basic Information

Item Value
RNA id XM_039812472.1
length 1858
RNA type mRNA
GC content 0.47
exon number 9
gene id plvapb
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14548589 ~ 14554920 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGCCCCTTTACACACCTAAGGGTCATTGTTTACATCCATCCATACATGCCTGTATGTTTCTGCACACTGACAGTGTGGCAGAGCTGTggaagacagagaaacaaacaTCACCACTGGTTGTTTTTCCACTTCTGCTCAACAGGGTTCACCTTGAGGCCTCAGCACTTGCTCTGCAGAGAAGATCACATCTGAACGGAAACCTTGTGGATTTTAGCAAAAACAATTCCTATTTGATCGTCCAAAACCAGCTGCAACCATTTCTCCCCCAGCAGTCATGTACAGCTCCAGCTACTCCCAGGCCAAGTTTGGCCTGGAGGCAAAAGTGCCTATGCACAAGCCCAAAGGGAAGAGCTGCGGCTACTACATGAGGATCGTCTTCTTCTTTTGCTCTCTGATCCAGTCTCTGATCATCGTCAGCCTGGTGCTCTTCCTCATCTATGGACAGCCGGAGAAGTCTGCAGAGGAAAAGAGGGTCCAGGAGCTGGAGCTGAACTTCAACAGGGTGAGTGAGAACAATATCCAGCTGAGAAAGGAGAAAGGCGAGCTGGGAGCTCAGCTGGGAGCTCGCACAGCTGAGAAAGCTGCTCTGGAGTCCGAGTTGGCAAAGCTGAAGACTGAAGCCAACAACACAGAACATacgctgaaaaataaattaACTATCTGTGAGAGTAAGGTGAGCATGATGATGCGTCGCTCCACCCTTGCAATCCAGCCCCCTCCTGTGGCCACTACTACCAATGAAATGAATTCTTTGAAGACCCTCAACGCTCGGCAGAAAGCTATGATAAACCTCATCGAGTCAAATTTCACCCAGATGGTTCAGTACCTGAGCCAGGAGAGAGACAAAGCCCTCAGAGAGCAAGACACCCACCAGCAGGATGCCATCACCCTGCGCAGGGAGAACAGGGAGCTGAAGGAGCAGCTCACCACCTACACCAGgaAGTGCAAAGAGGACTTTGCTCACTCTTTGGATGGGATCAAAACGGTGACCAGTGAATTCCTGAACAAGATCAACAACCTGTTTCCCCACCAGCTGACCTTTCACCTCAGCTGCCACAGCCAGCAGGTGCAGATGGAAAAGATCCGAAACAGCTGCACGAACCTCTCCAGAGACGTGGAAAACAAGTTCCAGCTGTATTTAGACAATGTGGGCAACAAGgTGGCTGAGATCCAATCCAAGTCCAGTCGTCTGGAGGTGCAAAACTCACAATTGACTTCTGACCTGCAGCAGTGTGAACGCAAACACAGTGAGACGGTCACCGAGGCCGCCAAGCAGCTGCAGCTCAAGCAAAAGACCCATGACGACCAGGTGGAGAAAATACTGATCGAGCAGAACCGGCTGAGAGAACAGAACAAGCTCCAGGAAGACAGTTTGGCCCTGAGAGATAAAGAGCTTCAGCGATTGCTCTCTGCTCAGCCCAACttcaagACTGGTGTTCCTAAAGCTGCCAGCCTACAGGCCTCTATTGGAGAACCTGGCATCAGCAAAACTCCCACGGTGAGATGAAATGAGTGGTGCGCCACAGTGATCAACATTTTGACTTTTAAAAAGACATGTATAAATTCCTTATACAACACTCTTTTATACAACCTGTAAATACCATGTCTATGTTAGTGACATATTTACTGTTGTTGGTTTGTGCATGCTTTGCCTAGCTCTACGTGGAATTGAATTGTGTTTGAGTTTAAACATTTGCTGTGAAAAGCCTTGGTATCTATATTAaggtaaatgtaaaaaatatccATGACACTGGTGTAAATATTTAAGATTGTGTGTCACTCGCTGTGGTTTCTGTAGTtacagaatgtttttttgtaattacaaataaattaaataaaaactgacTCAATCCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128645 lncRNA upstream 179363 14368922 ~ 14369226 (+) True G95372
TU128557 lncRNA upstream 284703 14258285 ~ 14263886 (+) False LOC120565959
TU128779 lncRNA downstream 134462 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 140762 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 144630 14699550 ~ 14700145 (+) False LOC120565380
XR_005640293.1 lncRNA downstream 232148 14787068 ~ 14791606 (+) True LOC120565827
TU128805 lncRNA downstream 324162 14879082 ~ 14879287 (+) True G95492
XM_039812080.1 mRNA upstream 4061 14537576 ~ 14544528 (+) True babam1
XM_039810587.1 mRNA upstream 50015 14480454 ~ 14498574 (+) True si:ch73-61d6.3
XM_039810588.1 mRNA upstream 50015 14482779 ~ 14498574 (+) False si:ch73-61d6.3
XM_039810580.1 mRNA upstream 69522 14469044 ~ 14479067 (+) True mfsd12b
XM_039810581.1 mRNA upstream 69522 14469044 ~ 14479067 (+) False mfsd12b
XM_039810569.1 mRNA downstream 24107 14579027 ~ 14619203 (+) True ano8b
XM_039810568.1 mRNA downstream 36608 14591528 ~ 14619203 (+) False ano8b
XM_039810570.1 mRNA downstream 36608 14591528 ~ 14619203 (+) False ano8b
XM_039810178.1 mRNA downstream 69359 14624279 ~ 14637054 (+) True abhd8b
XM_039811168.1 mRNA downstream 137584 14692504 ~ 14704353 (+) True LOC120565380
XR_005640172.1 other upstream 1165845 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1328217 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1448144 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 3104056 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3299942 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 64438 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 255448 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 255448 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1765574 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3300717 17855637 ~ 17859152 (+) False nppc

Expression Profile