RNA id: XM_039812473.1


Basic Information

Item Value
RNA id XM_039812473.1
length 2187
RNA type mRNA
GC content 0.46
exon number 7
gene id si:ch211-262h13.5
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11514958 ~ 11523948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCTGAACGCAAACACAAGAGAACAAACGTTAAACCAGCTCTGTCTTTTAGCTCCTGGAATCTCTGCCACCATGGCTGAATCCATCTGCACATTATTACGGCTATTATCCCTGCTGTCCATtcacactctgtgtgtgtacgcAGAGGGTTTTGCACTGTCGCCTATTGAACTTGCTCCCATCCCCTGTAATGACAAAGCAGTGGAGAAGCTATCTCGTCTGGCTGTAACTTACATCAATGAGGATCGCCCCGATGGCTACAAGTTTGCCCTCAACCGCATTGCAAATGTCCACCTGCACGCTCAGGGCCCAGCAGGCAATGTGTATTACCTGGACCTGGATGTCCTGGAGACCAAGTGTCACATAGGCAGCCCAAAACCATGGAAAAGATGTGATGTCAGACCGTTCATGGAAAcaCAAATCTCTGGCAACTGTAACACCACCATTCTCCACACACCAGAGGGATACTCCTACCTGTACAGCTACGACTGCACTCTTGTCCCAGATCCCCCAGAGAAGCTCCAGCAGACCTGTCCAACCTGCCCCCTCCTGCTCCCTGTAGATAGTCCACAGGCTGTGAATGCTGCCCAGGCCACTTTGGCATCCTATAAGAGACAGTCCACACTGGGTGCAGAGCTCGGAGTAAAGAAGATCACCAGAGCTGCAGCGCAGGTTGTGCCAGTGAAAGCCAGCTTTGTGGAGTACACCGTCCAACAGTGTCCAGAGGGAGTGACAGAAAGAGGCACCTGCCGGCGACTGACAGTCAAGTCTGACACAGAGACTGCAGGTTTCTGTGCAGGATCTGTGCACGGAGACTTAACCGTCCATCCTGATGTCCGGGTGTCCTGTGAGATGTTCAAAGCACAGGATGTGGACATCTTCAGACCCGTGCAGCCTCAGGGTCACGAACTCCCCCAAGACCATGCGATCCCAACCTTCCCCACTGTGTTCGATGACCAAGGAAATGATCTGCTGCCTGTTCCCTCTTACACCACACTGCCCCCTGCTGTTCAACCACTGCCATTTGACCCCACACCCATTCTCCCTCTGCCCTTTGACCCCCCCGTTGTGGTTAACCCCTTTATTCCCCTCAGCTCATCTTCCAGTGAGTCTGCTGAAGATCTAGTAAACCAGCAACAGCGACCCCCAGGTGCTGGTCCTTCTGCTTCATCCTCTGAAGAGATAGGAGGCCCCGTGGCACTACGACCACCCATTGACTTCCACTACAAGAGGCGTGACCGCAAGAGACGGCAGGCCCTGGCGGAGACCTCACCCTCTCACAACCCAACCTTCCTGTCTGATTTCCCCAGTGGGTCTTCTCCTTTCCGCTCCTGTCCTGGTCCTGCTCGCTACACCACAGTTTAACTAACTGGTGCAGCCGGTGACGGGGTGGACCGATAAACTGCTCTGCTCCCTGTCACTGTAGGCTTGTAATAGCCTTATTTTATGATAATGAGAGGAATGCCATCTCTTCTCACTGGCCCTGAAATTACCTCTCTGCTGCTAATACTGCTCCCAAAGCAGCCAAAGCTAAAACCATATATGTATTTGAAAATGGCTTCAaatattttaactattttaaataaatcttgaATCCCCTGTCAACTGCTTGATGAATTTATATACTTTACTTACTAGCAGTCTAATACTTACAGTATCTATTTTGGTGGTATAAAGCAAAGGAATTTAGATTTTGGAGCTGAATATAAGAGCAGAAACGGTTTATCGATTCGTTGATTGAAAGAAAATTAATCTGTAACTATTttagaaagaagaaaataacatCTGCTAATTGGGTTTACGGCTGTGAGAGTTTTTTGCTTTCCATGTGTTTTATATCTTTCTAAATTAAACATATATTTGGATTTTGGCTTTTCAAAACAGGACATTTGAAGACATTGATTTAGGTTCTTGGAAATTGTCATGGGCATTGTTTGGATGTTTTGTAATCTAAACAATGaatcaattaatttattttaattgcaCCACTAAAATATTCAGCGGCAGTGATTTCTTACAACCAGTGTACTGAATTCCCTTGTAACACATTGCACTACTATGCCCTGATAATGGATGAAatggatttctttttctttgaactTGCACTAAAATGTTTTAAGAAAACACTGAGAGAAAAATACGAAGTTCTGTGAGGAAGCACAAAAatattagacaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127746 lncRNA upstream 274721 11238444 ~ 11240237 (+) True G94706
TU127731 lncRNA upstream 320028 11194647 ~ 11194930 (+) True G94691
TU127730 lncRNA upstream 338741 11176004 ~ 11176217 (+) True G94690
TU127728 lncRNA upstream 387938 11126756 ~ 11127020 (+) True G94688
TU127727 lncRNA upstream 393274 11121469 ~ 11121684 (+) True G94687
TU127799 lncRNA downstream 52840 11576788 ~ 11577261 (+) True G94747
TU127840 lncRNA downstream 127574 11651522 ~ 11659072 (+) True G94779
TU127859 lncRNA downstream 297703 11821651 ~ 11821882 (+) False znhit6
TU127883 lncRNA downstream 392683 11916631 ~ 11920037 (+) True G94813
TU127963 lncRNA downstream 637690 12161638 ~ 12196616 (+) False lrp8
XM_039810317.1 mRNA upstream 24920 11473356 ~ 11490038 (+) False LOC120565022
XM_039810318.1 mRNA upstream 24920 11473356 ~ 11490038 (+) False LOC120565022
XM_039810319.1 mRNA upstream 24920 11473924 ~ 11490038 (+) True LOC120565022
XM_039812048.1 mRNA upstream 56812 11359690 ~ 11458146 (+) True LOC120565923
XM_039812317.1 mRNA upstream 158087 11311738 ~ 11356871 (+) True LOC120566075
XM_039812239.1 mRNA downstream 1522 11525470 ~ 11549098 (+) False LOC120566036
XM_039812240.1 mRNA downstream 1530 11525478 ~ 11549098 (+) False LOC120566036
XM_039812245.1 mRNA downstream 1530 11525478 ~ 11547855 (+) False LOC120566036
XM_039812242.1 mRNA downstream 1551 11525499 ~ 11549098 (+) False LOC120566036
XM_039812243.1 mRNA downstream 1656 11525604 ~ 11549098 (+) False LOC120566036
TU127781 other upstream 70425 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 266311 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 566712 10946976 ~ 10948246 (+) False si:ch211-162e15.3
TU127611 other upstream 573714 10916925 ~ 10941244 (+) True G94598
TU127375 other upstream 1355151 10074206 ~ 10159807 (+) False LOC120565490
XR_005640174.1 other downstream 1481628 13005576 ~ 13100445 (+) True raver2
TU128204 other downstream 1649077 13173025 ~ 13220372 (+) True G95046
XR_005640172.1 other downstream 1855450 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 3095410 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 3286420 14810368 ~ 14916606 (+) False dennd1b

Expression Profile