RNA id: XR_005640207.1


Basic Information

Item Value
RNA id XR_005640207.1
length 681
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id LOC120565226
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20266651 ~ 20289381 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaagaagaagtgacTTTTTGAAAGTGGAGAATAAGTGTGCTAAAATTTCAACTCTTCCTCAGATGTCTACCTGCAAGCCAGCACCTTAGAAGAGGTGTTAGCCCTGCGATGAACTGGCAACTGGTCCGAGATGTTTTCCTGTCTCCGGCTGAACGTGGATTGAGAATAGACGCACAATAAATAAACCCTGATGAGGCATAAGCAGGACTCACAATTCACCAATAATGCCTTGGAAACATCTCAACTGATTGCATCAAGTTGTGCTGCTGATGCCCCACTGCTTTACACTCCAGTCCCTCCTCATTTTTTGCCCCAAACCCCTGATCCAACATCCTGCTTCAACATGAAACATGCATTATCAATTTCAGATAAATATCCTCCAAATGTCACGTCTGCCCTGCTCTTATTGTTTTCTGCTTGTTTTTatggacttcctgttttattttgatatccattgtttgtcttcattcacttcacttgtcttcctgcctttgtttgtttcccGCCTTTTTTGATTACCTGTCTCCTCCCTAATGTTATTCACCTGTGTCTAGTTGTCTTCCCCTCCCCCGTGTATATATACTCACCTGTGTTCACTTGTTCCCTGCCAGATTGTTGTTGAACCTTTTGTGTCACACTCTCCAGCGTTGTTCccagtgtttgtttgttctATGTTATTC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130377 lncRNA upstream 217434 20047879 ~ 20049217 (+) True G96653
XR_005640277.1 lncRNA upstream 219279 20047018 ~ 20047372 (+) True LOC120565691
TU130372 lncRNA upstream 264526 20000828 ~ 20002125 (+) True G96648
TU130327 lncRNA upstream 515279 19751120 ~ 19751372 (+) True G96616
TU130321 lncRNA upstream 581566 19684150 ~ 19685085 (+) True G96610
XR_005640266.1 lncRNA downstream 179172 20468553 ~ 20470747 (+) True LOC120565515
TU130455 lncRNA downstream 185426 20474807 ~ 20485886 (+) True G96692
TU130468 lncRNA downstream 259649 20549030 ~ 20553367 (+) False prkacba
TU130469 lncRNA downstream 261465 20550846 ~ 20553367 (+) False prkacba
TU130520 lncRNA downstream 325551 20614932 ~ 20615202 (+) True G96742
XM_039810778.1 mRNA upstream 10057 20160984 ~ 20256594 (+) True adgrl2a
XM_039810777.1 mRNA upstream 10058 20156410 ~ 20256593 (+) False adgrl2a
XM_039810779.1 mRNA upstream 10058 20156410 ~ 20256593 (+) False adgrl2a
XM_039810792.1 mRNA upstream 10058 20156410 ~ 20256593 (+) False adgrl2a
XM_039810794.1 mRNA upstream 10058 20156410 ~ 20256593 (+) False adgrl2a
XM_039811697.1 mRNA downstream 259618 20548999 ~ 20564824 (+) True prkacba
XM_039811698.1 mRNA downstream 259619 20549000 ~ 20564824 (+) False prkacba
XM_039811699.1 mRNA downstream 259619 20549000 ~ 20564824 (+) False prkacba
XM_039812396.1 mRNA downstream 275594 20564975 ~ 20568112 (+) False samd13
XM_039812397.1 mRNA downstream 276155 20565536 ~ 20568112 (+) True samd13
TU130185 other upstream 734974 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 1481015 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 2394240 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 2394804 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 2397849 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 1401516 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 1994265 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 2196130 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 2203576 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 2282678 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile