RNA id: XR_005640228.1


Basic Information

Item Value
RNA id XR_005640228.1
length 2341
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC120565370
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15222133 ~ 15268185 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGCCCCACTTCCACCATCATCAAAGCAGCCTCAGATTCAGCTCCAGGTCCAGTGAGCCCTGCAGGAATCCTGCAGCAGATAACATCTATCAGGTCTTCACTTGGGGGACGAGCTGAACAAAAACAACTCAGTCATGACATCACAGCCAGTCCTTGTTCCTCAGCACTGAGGCGTCATGTGGAAGAGGAGATAGACAAAAGGAAGAGAAAATAAAGCGAGCAAAATTATGTTGTACATTACTCAGACCCATGCAAGGAACAACTCCAAGACATGCAAAGACAGAACAGAGACTGATGCAACTATTCAGCCCTAAAGACAAAACATAACTGTATTTGGCCATGGACGAATCCGCACACTCAAACACCCAACAAACTCCCTGTGTTTCCCTCCAACACAGCACCTAACAAAGCCTTATGAAGTCCTCCAAAACACTCCGGTAATACGCCCTCCTATTCAGATACCTTGGTGCTGGGGGGATAAGCAACTTTGACTTGTTTTGGTTTGTCTGCCACCGTTCCCTTCAGTCTTGTTTTGATCTGTTTGGAATGTGACCCGATactgattttaaatgtaaaaaggaaaaaacatctGAACAACTGATTTCCTCACGGCAACCTTGACGAGTCTTTTCTGCTCAGACGTGTCCTGATTGGATACGTTTTGTATCCAGTTTTATCTACAAAAGAAACAGGTTACAAGACTGACTGATTCTTCTTTAACACAAAATATTTGAAGGATTACATGGTTAGACAGCTCAGTTACAAGAAAGGCTATAAGAGGAAGTCTGGTATCAATAGTCCTTGGTCTGCTGACTGTTTGCCAACCACAGTGTCTCTAAACAATGTAATTCTAACGCGCATTATTACATTGTAACTCCAAATGCACTGCAGACACGGTACAAAAACACCTACAGTAATAATAGATACAAGAGTATCCAGGGTCACGTTTACAAAATGTGGTCATAAAGCACCATTAGGGCCATATGTAACACACTGTAAATGTGCAGTAATAGAATGTATACTAAAAAAGTAAgggacatatactgtacatgttaatTCTTACCTGTATACTACTTTGTTTTAtccattatatatttatttgtaattCTTGTTTTTACTCTTATTCCAAATTTAATTTTTCTATATACACCAGCCTTTTTAACATAGCCTAAGTAGCATGCCACCCTTGATTTCACTACACATATTGTATAAGGATCCTTGAAACCTGAATCTAAGTGTTGAGTAAATGTTTGCATCTTCCTGTGAACAAAAAACAAGGACTTCTCTTCAAAGTCTGTTTGTTGAAACTCAGAGTTGGCATGACATGAAGCATATGACCATTGTCTAATTGAGGCCTCATGTTTAACTTTACTCATTTTATCTTGAAAACTATAACTTTGAACAGTGGATTCCTCAGTATTAGAAGTAAGGCCAATGTGAGGAAAACAGATGGATTTTGTATTCATATTTGAATCACTGTAAAAATCCACCAATTTACTTTCAAAGACTGCTGacacaatattttgtttttgtcaaatcTACAAACTTCAGAGACTTTTCGAGGTCCTTGTGCACcttgttatattgttatatgtTAAGTGTATCTCTGTTCTAATGAGCTTTGAATCTCTGTGTTTCATAACACTTCTAGTGTTACCAAATTGGCATATGACATCAAGCGACTTTGGGAATAAAGTAACACTCATATGCCTAGCTGGCATGTTCTTGGCACAATACTGACTACATCCATTTTTTTGGTTCTTGGTCATAATTTTCAAGAACTATATGTGCTTATTTTGCACTAATTGGTAAAGACAGTTCAGTCCGACTAGAGTCATCTATGATCTTGCCATTTCACAGATGGCAACATAAAGGATTCAACTCGATGAACCGCACAGCCAACGTTAGCCAGACTATGGCGAGTTAGCAAAAATTCTGACTACATCCTGAATAGTAATGATATTGTTAGTAGTGTTGGTTCTCTGGTTCAGGAGGCCTACTACAGTTTATACTGGAGACACTTATGTGATCGGTGTTTGTCTATCTTTTGACACCCTTCAAGATGTTAAAGAGAAGGTTTTTTTACATGGAAGCTGGGAAACAACTTGAGCCCTTGCAAACAGGAACATACAGTAGTTTGACGTCTTTGGACTTAACCACCACACAAGACAGTCATGTAATATCCAGAAACTTCTTCATTTACTTGAAAAACACATAAGCTTctcgtgtgtgtatgagtcagcTCATTGCTCCATAGTGCCACATCAGCAAATCTATGTTAATacaaagatatatatattattgatttaaaaggactgatttcttttttttatttctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128812 lncRNA upstream 290052 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA upstream 290052 14931069 ~ 14932081 (+) False G95496
TU128807 lncRNA upstream 296530 14923952 ~ 14925603 (+) True G95493
TU128809 lncRNA upstream 296530 14924461 ~ 14925603 (+) False G95493
TU128802 lncRNA upstream 298297 14922981 ~ 14923836 (+) False dennd1b
TU129007 lncRNA downstream 28099 15296284 ~ 15297193 (+) True G95640
TU129053 lncRNA downstream 119813 15387998 ~ 15389142 (+) True G95681
TU129093 lncRNA downstream 206409 15474594 ~ 15478157 (+) True G95710
TU129122 lncRNA downstream 360784 15628969 ~ 15632805 (+) False LOC120564959
TU129124 lncRNA downstream 364728 15632913 ~ 15633568 (+) True G95729
XM_039811130.1 mRNA upstream 68556 15027011 ~ 15153577 (+) True rabgap1l
XM_039811131.1 mRNA upstream 68556 15027011 ~ 15153577 (+) False rabgap1l
XM_039811132.1 mRNA upstream 68556 15127592 ~ 15153577 (+) False rabgap1l
XM_039811133.1 mRNA upstream 68556 15135829 ~ 15153577 (+) False rabgap1l
XM_039811153.1 mRNA upstream 143662 15072598 ~ 15078471 (+) True gpr52
XM_039811377.1 mRNA downstream 25410 15293595 ~ 15295680 (+) True uba52
XM_039811369.1 mRNA downstream 75481 15343666 ~ 15350593 (+) True ddx49
XM_039812446.1 mRNA downstream 111330 15379515 ~ 15382779 (+) True lsm4
XM_039812466.1 mRNA downstream 202462 15470647 ~ 15472763 (+) True LOC120566177
XM_039812071.1 mRNA downstream 229841 15498026 ~ 15505221 (+) False mpv17l2
XR_005640328.1 other upstream 305527 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 308100 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 600720 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1839389 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 2001761 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 1052309 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2587452 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2598363 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2600481 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2603525 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile