RNA id: XR_005640290.1


Basic Information

Item Value
RNA id XR_005640290.1
length 909
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id LOC120565815
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22005775 ~ 22007353 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTATGAGGTGGGTGGGGGTGAATAACCAGTGATCAGTAAGGGTGGCCCTGATCTAAACATCTGATCTTTTCTCTGCCCttgtcctcttcttcctcctcctcctcttccaacTCTTTCTCCATGAACTTGTCCTGAGGTACATCCCAtgtcccttatttgatagctcctcgactctgtcctcggctgaaccggaagttgttctgtccctcctcagtgaaggccgtctcaaagctcttatttctgtcCTGAGGGCCGAGGAGCGAGCTTCGAGGAGGGAACACCTCGGAGACATAGCCGGTATCAGCCTTCCCTGAAGTTGTGCAGATCTCTCCCGTGactcctcggtgggagggactaagacgcgaggaagggaggcaagtggaggactcgaggaggcaatttaagcaaCATGAGATGCAGCTCTGGTTGTcgtcccctgcctctccctcctactccccttgctctctgtctattgtcgGCATCCACTGTTCGAagcagGGACTAAGGAACAAACGGAGACGTTCATACGTCTACGTGTAGGCAGCAAGCAGCTGTTTACCAGGGGGAGGGACACCACTGCGAACGGATATCGGCTTATTTTGGAGATGATGGGGATCGGAGGGAGGGTCTCCCACACCCAGGCCAAGAAGAAGTGGGACAACCTAAAAACGAAGTGGGAGATATTGAGATATTGCAGGAGTCCCTGCCTTATTGCCTCGATCCAAGGGGACAAACCAGGGCCAAGCGCCGCACAAGAGGTAGAGGAAGGGattgatgaggaggaggaggaggaggaggaggaggaggacaaggGAGAGAGTGGATCCATTCCTTCAACTCATCAAGGACGACATAAAATATCAGGGAGAGGCAGATGAGAGGAGGGAAGCAGAGGCCGAGGTCAAaa

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131148 lncRNA upstream 8032 21997413 ~ 21997743 (+) True G97181
TU131132 lncRNA upstream 61214 21942965 ~ 21944561 (+) False G97170
TU131135 lncRNA upstream 61214 21944082 ~ 21944561 (+) False G97170
TU131133 lncRNA upstream 63371 21941105 ~ 21942404 (+) True G97170
TU131039 lncRNA upstream 261094 21743413 ~ 21744681 (+) True G97096
TU131159 lncRNA downstream 26444 22033797 ~ 22035674 (+) True G97190
TU131249 lncRNA downstream 84036 22091389 ~ 22093374 (+) True G97263
TU131286 lncRNA downstream 148758 22156111 ~ 22157958 (+) True G97295
TU131289 lncRNA downstream 150704 22158057 ~ 22174393 (+) True G97297
TU131330 lncRNA downstream 306295 22313648 ~ 22316358 (+) True G97335
XM_039811780.1 mRNA upstream 3116 22000197 ~ 22002659 (+) True LOC120565766
XM_039811779.1 mRNA upstream 3116 22000197 ~ 22002659 (+) False LOC120565766
XM_039811778.1 mRNA upstream 5678 21997919 ~ 22000097 (+) True LOC120565765
XM_039811631.1 mRNA upstream 26217 21967192 ~ 21979558 (+) True LOC120565695
XM_039811911.1 mRNA upstream 43227 21946176 ~ 21962548 (+) False tnfaip8l1
XM_039810681.1 mRNA downstream 46004 22053357 ~ 22079019 (+) True zfr2
XM_039810684.1 mRNA downstream 46004 22053357 ~ 22079019 (+) False zfr2
XM_039810682.1 mRNA downstream 46004 22053357 ~ 22079019 (+) False zfr2
XM_039810685.1 mRNA downstream 46004 22053357 ~ 22079019 (+) False zfr2
XM_039810683.1 mRNA downstream 46004 22053357 ~ 22079019 (+) False zfr2
TU131036 other upstream 223775 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2474098 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3220139 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4133364 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4133928 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 276293 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 478158 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 485604 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 564706 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 565116 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile