RNA id: XR_005640321.1


Basic Information

Item Value
RNA id XR_005640321.1
length 438
lncRNA type read_through
GC content 0.50
exon number 3
gene id LOC120566015
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9434721 ~ 9437621 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttgcAATGTGTACAGTCCCACAGGGCAGACCATGTTGTGAACCTCAGGGCTCCCCGAGGACTCTAACACACAGTAGTTCTGCTCAGGAGACGTTTGTCAAAGGACCATGAGTTTGTCTGTAATCCTCTTTCTCCAACTGTGGGGGATTGTGGAAGTCTCCTCATCACAGAATGGTTCACCATCGAGCTCTAACCCCCGCCTGCAGATGGAGGGGTTACAGTAATAGGTTTACCAGAAAATGACAATCCCATTCTTCCTGACCGCCCCCCTCGCATTCATCTGTGAAGGACCTGGGAAATATCTGAATGGCAGTTCAGTGCTGAGATGTGGTCAAGATGGACAGTGGGATCATCCATTCCCCACTTGTGAAGaaaactgcAAAGTCCCAGGTCTATCAGACGGCTTACAACTCCCCACACATGAACCAGGCGATCAACT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0052548 regulation of endopeptidase activity biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00360 Phenylalanine metabolism
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127068 lncRNA upstream 264964 9169319 ~ 9169757 (+) True G94201
TU127065 lncRNA upstream 265844 9147162 ~ 9168877 (+) False G94199
TU127056 lncRNA upstream 338429 9089828 ~ 9096292 (+) True G94192
TU127026 lncRNA upstream 433015 9001456 ~ 9001706 (+) True G94169
TU127024 lncRNA upstream 434261 9000163 ~ 9000460 (+) True G94167
TU127117 lncRNA downstream 46382 9484003 ~ 9485965 (+) True G94232
TU127112 lncRNA downstream 56360 9493981 ~ 9495328 (+) True LOC120566016
XR_005640322.1 lncRNA downstream 56532 9494153 ~ 9495357 (+) False LOC120566016
TU127116 lncRNA downstream 102916 9540537 ~ 9541059 (+) True G94231
TU127114 lncRNA downstream 103846 9541467 ~ 9543494 (+) False LOC120566011
XM_039812209.1 mRNA upstream 1560 9406710 ~ 9433161 (+) False LOC120566012
XM_039810147.1 mRNA upstream 350864 9080859 ~ 9083857 (+) True LOC120564889
XM_039812316.1 mRNA upstream 364045 9067178 ~ 9070676 (+) True LOC120566074
XM_039812315.1 mRNA upstream 364045 9067182 ~ 9070676 (+) False LOC120566074
XM_039810130.1 mRNA upstream 372685 9057341 ~ 9062036 (+) True LOC120564878
XM_039812213.1 mRNA downstream 24824 9462445 ~ 9473374 (+) True LOC120566014
XM_039812218.1 mRNA downstream 137637 9575258 ~ 9587669 (+) False depdc1a
XM_039812217.1 mRNA downstream 137815 9575436 ~ 9587669 (+) True depdc1a
XM_039812221.1 mRNA downstream 151535 9589156 ~ 9603575 (+) True LOC120566020
XM_039812222.1 mRNA downstream 177174 9614795 ~ 9671788 (+) True fnbp1l
TU127064 other upstream 275026 9147162 ~ 9159695 (+) True G94199
TU126920 other upstream 1180146 8237370 ~ 8254575 (+) True G94073
TU126919 other upstream 1188900 8237370 ~ 8245821 (+) False G94073
TU126885 other upstream 1529474 7898672 ~ 7905247 (+) False LOC120565614
TU126750 other upstream 2084134 7349810 ~ 7350587 (+) True G93938
TU127128 other downstream 114675 9552296 ~ 9557568 (+) True G94239
unassigned_transcript_387 other downstream 134677 9572298 ~ 9572369 (+) True trnah-gug_12
TU127191 other downstream 380000 9817621 ~ 9879198 (+) True G94281
TU127195 other downstream 407128 9844749 ~ 9845804 (+) False LOC120565620
TU127196 other downstream 407128 9844749 ~ 9845981 (+) False LOC120565620

Expression Profile