RNA id: XR_005640361.1


Basic Information

Item Value
RNA id XR_005640361.1
length 83
RNA type snoRNA
GC content 0.33
exon number 1
gene id LOC120566227
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22572469 ~ 22572551 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTGTCAATTGATGATATTGTTTACAAAACAATGGGAATCTCTCTGAATAAGAGTGAAAGAATACTTGTAACTGATGCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131333 lncRNA upstream 249614 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 256111 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 398076 22158057 ~ 22174393 (+) True G97297
TU131286 lncRNA upstream 414511 22156111 ~ 22157958 (+) True G97295
TU131249 lncRNA upstream 479095 22091389 ~ 22093374 (+) True G97263
TU131439 lncRNA downstream 21945 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 22236 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 84948 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 84948 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 208056 22780607 ~ 22800145 (+) True LOC120565733
XM_039812096.1 mRNA upstream 2169 22530087 ~ 22570300 (+) False osbpl9
XM_039812097.1 mRNA upstream 2169 22530087 ~ 22570300 (+) False osbpl9
XM_039812099.1 mRNA upstream 2169 22548893 ~ 22570300 (+) True osbpl9
XM_039812098.1 mRNA upstream 2169 22553561 ~ 22570300 (+) False osbpl9
XM_039812095.1 mRNA upstream 43460 22514698 ~ 22529009 (+) False abl2
XM_039810961.1 mRNA downstream 4646 22577197 ~ 22582655 (+) True tor3a
XM_039810960.1 mRNA downstream 11655 22584206 ~ 22589319 (+) True calr
XM_039812081.1 mRNA downstream 19092 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA downstream 19092 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA downstream 19092 22591643 ~ 22623535 (+) False eps15
XR_005640352.1 other upstream 330 22572059 ~ 22572139 (+) False LOC120566218
XR_005640308.1 other upstream 71454 22492957 ~ 22501015 (+) False soat1
XR_005640282.1 other upstream 84366 22485511 ~ 22488103 (+) False LOC120565764
TU131315 other upstream 285197 22283646 ~ 22287272 (+) True G97321
TU131036 other upstream 790469 21690897 ~ 21782000 (+) True G97093
XR_005640356.1 other downstream 172 22572723 ~ 22572804 (+) True LOC120566222
XR_005640353.1 other downstream 616 22573167 ~ 22573247 (+) True LOC120566219
XR_005640360.1 other downstream 1079 22573630 ~ 22573692 (+) True LOC120566226
XR_005640359.1 other downstream 2040 22574591 ~ 22574672 (+) True LOC120566225
XR_005640355.1 other downstream 2292 22574843 ~ 22574924 (+) True LOC120566221

Expression Profile