RNA id: TCONS_00006714


Basic Information

Item Value
RNA id TCONS_00006714
length 446
lncRNA type lincRNA
GC content 0.41
exon number 4
gene id XLOC_003436
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24015835 ~ 24024576 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTCCTTTAATCCTATCTGTGCAGAAAAGAAGCCTGAACGATATCAATGATTTGCTGACAAACATCCAAAACCCCAAGCATGATTCTTCAGAATACAGTTAAACAAtaagaggcGTTTTTTCCATACAGTCCATACTGTTGACATCATCAGAAGGGGCCCTGAAGACCCTGCAGCCTGAAATATAAGCTGTAATGTCCATGTGAACACAAAGAGTAAATCTAGAGCCAGTATCAAAAGGTGCAGTCTGGAGCCCGGGGAGGTTTTGCGAATTTCAAGAATGGACTGGCACATGACTGTTGCCCGTGTCTGAATTAAACACATCAAAACAGACTACAAAGAGCCAATATAACCCTATCTGACTGTACAGTCACCTGAGGTAACTATCTTTTGTAACTGAGTACATGCTGTCATTAATAGTAGCTTGCAGTTACTGATAAATGTCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000194275

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006707 lncRNA upstream 104902 23895540 ~ 23913499 (+) True XLOC_003432
TCONS_00008604 lncRNA upstream 115711 23895529 ~ 23902690 (+) False XLOC_003432
TCONS_00008603 lncRNA upstream 420730 23594349 ~ 23597671 (+) False XLOC_003430
TCONS_00008602 lncRNA upstream 420730 23594349 ~ 23597671 (+) True XLOC_003430
TCONS_00008601 lncRNA upstream 1091213 22920469 ~ 22927188 (+) True XLOC_003426
TCONS_00006718 lncRNA downstream 11228 24035804 ~ 24039174 (+) False XLOC_003438
TCONS_00006719 lncRNA downstream 14557 24039133 ~ 24040070 (+) True XLOC_003438
TCONS_00006721 lncRNA downstream 36580 24061156 ~ 24083588 (+) False XLOC_003440
TCONS_00008606 lncRNA downstream 36980 24061556 ~ 24083588 (+) False XLOC_003440
TCONS_00008608 lncRNA downstream 39367 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00006712 mRNA upstream 9662 24001993 ~ 24008739 (+) False XLOC_003435
TCONS_00006713 mRNA upstream 10413 24002503 ~ 24007988 (+) True XLOC_003435
TCONS_00006711 mRNA upstream 18230 23993298 ~ 24000171 (+) False XLOC_003434
TCONS_00006710 mRNA upstream 18230 23993298 ~ 24000171 (+) True XLOC_003434
TCONS_00006709 mRNA upstream 30719 23957440 ~ 23987682 (+) True XLOC_003433
TCONS_00006715 mRNA downstream 3139 24027715 ~ 24029711 (+) False XLOC_003437
TCONS_00006716 mRNA downstream 3233 24027809 ~ 24032190 (+) True XLOC_003437
TCONS_00006717 mRNA downstream 9769 24034345 ~ 24044586 (+) False XLOC_003438
TCONS_00006720 mRNA downstream 21603 24046179 ~ 24056609 (+) True XLOC_003439
TCONS_00006724 mRNA downstream 226565 24251141 ~ 24299538 (+) False XLOC_003442
TCONS_00006700 other upstream 621016 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1304270 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2367763 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 2966057 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 3985216 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006723 other downstream 154247 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 314786 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 314798 24339374 ~ 24345421 (+) False XLOC_003446
TCONS_00006735 other downstream 314809 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006738 other downstream 314820 24339396 ~ 24340731 (+) False XLOC_003446

Expression Profile

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