RNA id: TCONS_00006716


Basic Information

Item Value
RNA id TCONS_00006716
length 1300
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_003437
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24027715 ~ 24032190 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAGTACAGATCAGGAACTGCAAGATACCTTCCTGAAAATGTGGACCCTAACTTGTGTACTCATTTAATTTATGCTTTTGCTATTATCAACTATGCCAATAACATTGCAGGCAGTGAGTGGAATGATGTCGTCCACTATTCAACCTTCAATGCACATAAGAAACGaaatccaCAGCTGATAACCTTGTTGTCTGTCAGAGACCAGGACTCAAGTCAATTCTCTATTATGTTATCCAAGTGGATAAACCGCCAGACTTTCATCAAGTCTTCTATTGAGTTTCTGAGGAAATATAACTTTGACGGACTGGATTTGGACTGGGAAATGAAAAACACTTCAGAGATGCATCCAGAAGATAAGCTGAAATTCACTCTTCTGTGCAAGGAACTTCTGGAAGCATTTGTAGCTGAAAGCCTGAACAGTGATACAAGACTGATTCTAACAGCAACTGTTTCCGCACAAAAAGATGTTATTGAAAGGAGCTACATAATTCCAGAGATCTCAGAGTACTTGGACTTTATTAATGTCAAGACGTTTGACTTTCATACATATAAAGATGGCATTGCAAGACATCACAGTGCTTTGTACAGTGCCATGAGTGATGACAAGGATATCAAATCAAACACTGATTTTGCTCTGCAGTACTGGAGATCTCAGGGAGCTCCTGCTGAGAAGTTGTTGATGGGCTTCTCTACTTACGGACGCTCTTTTATCCTCAACTCCTCTCAGAACGGAGTCGGAGCCCCAGCCAATAAATTTGCTTCTCCTGGACCTCATACACAAGAGATAGGCTTGTGGGCTTACTATGAAATATGTCTTTTTCTAAATGGTGGTGTGGTACAGTGGATTGAAGACCAGAAAGTACCTTTTTCTGTGAAAGGCAATGACTGGGTGGGATTTGACAGTCTGAGAAGCTTCAATATTAAGACAAAATATCTACTGGAGCATGGCTTCGGGGGTGCGTTTGTGTGGGCTCTAGACCTGGATGATTTTTCTGGATATTTCTGTGGACAGGGCACCTACCCTTTAGTCAACAGCCTTAAGAAATCATTAATACATGGAATTGAATCGTCTTCCTCCATGACCAGCACCAACTTTTTCTTCAGTATTTTTGCAACAGCTGGAAAAGGCTCTTTGCCAACACCGATATGTGTGAAGATTGTCAGATCTTTTTCAGCACAGCAAAGTCTGTTTTGTGCAAACAGATCAGATGGACTATATTACAGAACGAATTCCCTCAACTCATTTTATAGCTGTAGTGAAGGAATAACAAATATCACCTGGTGCACCCCGTTCCATGC

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0008061 chitin binding molecular_function

KEGG:

id description
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-140106-118 Predicted to enable chitin binding activity and hydrolase activity, hydrolyzing O-glycosyl compounds. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell.

Ensembl:

ensembl_id ENSDART00000111829

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006714 lncRNA upstream 3233 24018401 ~ 24024576 (+) True XLOC_003436
TCONS_00008605 lncRNA upstream 5685 24015835 ~ 24022124 (+) False XLOC_003436
TCONS_00006707 lncRNA upstream 114310 23895540 ~ 23913499 (+) True XLOC_003432
TCONS_00008604 lncRNA upstream 125119 23895529 ~ 23902690 (+) False XLOC_003432
TCONS_00008602 lncRNA upstream 430138 23594349 ~ 23597671 (+) True XLOC_003430
TCONS_00006718 lncRNA downstream 3614 24035804 ~ 24039174 (+) False XLOC_003438
TCONS_00006719 lncRNA downstream 6943 24039133 ~ 24040070 (+) True XLOC_003438
TCONS_00006721 lncRNA downstream 28966 24061156 ~ 24083588 (+) False XLOC_003440
TCONS_00008606 lncRNA downstream 29366 24061556 ~ 24083588 (+) False XLOC_003440
TCONS_00008608 lncRNA downstream 31753 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00006712 mRNA upstream 19070 24001993 ~ 24008739 (+) False XLOC_003435
TCONS_00006713 mRNA upstream 19821 24002503 ~ 24007988 (+) True XLOC_003435
TCONS_00006711 mRNA upstream 27638 23993298 ~ 24000171 (+) False XLOC_003434
TCONS_00006710 mRNA upstream 27638 23993298 ~ 24000171 (+) True XLOC_003434
TCONS_00006709 mRNA upstream 40127 23957440 ~ 23987682 (+) True XLOC_003433
TCONS_00006717 mRNA downstream 2155 24034345 ~ 24044586 (+) False XLOC_003438
TCONS_00006720 mRNA downstream 13989 24046179 ~ 24056609 (+) True XLOC_003439
TCONS_00006724 mRNA downstream 218951 24251141 ~ 24299538 (+) False XLOC_003442
TCONS_00006725 mRNA downstream 257940 24290130 ~ 24297701 (+) False XLOC_003442
TCONS_00006726 mRNA downstream 266242 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006700 other upstream 630424 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1313678 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2377171 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 2975465 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 3994624 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006723 other downstream 146633 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 307172 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 307184 24339374 ~ 24345421 (+) False XLOC_003446
TCONS_00006735 other downstream 307195 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006738 other downstream 307206 24339396 ~ 24340731 (+) False XLOC_003446

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_01418324_01423047.mRNA True 2804 mRNA 0.42 10 CI01000058 1417497 ~ 1423527 (-)