RNA id: TU32664


Basic Information

Item Value
RNA id TU32664
length 1072
lncRNA type sense_over
GC content 0.43
exon number 1
gene id LOC120546960
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 46115387 ~ 46237439 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tccttgtgtggtccttcgggtcactgggacccgaaggaccacacaagggttaagtagtGCAATGTGTTACTATTTCTGTTATCTGCATAACCTTACATATGTGCCTACTGTTTATTAAATAACCACAAAGATGTCATGATTGCATTTTCTTACTGAAATATTACTCCAGCCAATATGAAGAAGATAACTGCTTTCAATAAATGCTCCATCAGACCAGAAAGTGGCCCAGCTAATATGCCTCCTGTACTGGAAATGCATGGTGCTGGCAGCTCGGTGATGCAGTGACTACTTGCTGTCTTTGGTTTTAACTGGACAATACTTTAGCCCAGTTCATTTATGGAAATTTATACCATCTACTTCTGTCTCACAACTTTCGGTAAACCATGCCACATTTCTTGTGGAGTAGGTTGTACTATGACAGCACAGACACTGTAATATGATTGCTGATAGGTCAGACTGCAAAGACAGTTTGGTCAAAAGTACAAAATGTACTACACCAAAGTTGAAATCGACATGAAACCTCAACACAGATTGTTTTAACAAATCTGATCTCCGGACGTGTTGGAAGCTATTCCTTCTCATGTCCCCCAAACCCTGTACTGCTGTTTGCCTATCCTCTCTGTGAATGTCAGCAAGTCTACGGAGCTGATGGTGGACTTTTGGGAAGACGCAGGGAAGGAACTACCAACCTGCCAGGATCAACCGAGGGTGGACAGCTTCAGATCCCTCTGTGTCTACATCACAGAGGATTGTCATGGTCCACTCACGTCAACACCTCAGTGAAGAAAGCCTGTCAGCTTCTCTACCTCTTCCCACGCCTTAGGCTATATCTACTCTGCTACGTTTTCCTTTTTTAAGCCGCGTTTTGAGAGTAAAAGATCTCGTTcacacaagagttttagctccagtagcagaatTCTGTCCATATTAACGTCTGACAACACATATCAAATGGCCATCCATATATACACTGGTTATGTGTGAgccggtgtaaacaggaagcagattgtctgacgtTACTTGCGGTTGTAAATCATGGATGTAGAAGTGCAATATTTTTGATAAAAGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32660 lncRNA upstream 56401 46113143 ~ 46113798 (+) True G24227
TU32572 lncRNA upstream 57176 46052152 ~ 46113023 (+) True G24164
TU32551 lncRNA upstream 230398 45938910 ~ 45939801 (+) True G24148
XR_005637296.1 lncRNA upstream 348948 45820603 ~ 45821251 (+) True LOC120548993
XR_005637297.1 lncRNA upstream 349664 45820081 ~ 45820535 (+) True LOC120548995
TU32670 lncRNA downstream 1379 46172649 ~ 46173064 (+) True G24236
TU32676 lncRNA downstream 8987 46180257 ~ 46180545 (+) True G24242
TU32682 lncRNA downstream 15892 46187162 ~ 46187415 (+) True G24248
TU32685 lncRNA downstream 20784 46192054 ~ 46192552 (+) True G24251
TU32706 lncRNA downstream 59059 46230329 ~ 46230534 (+) True G24268
XM_039782271.1 mRNA upstream 165 46115387 ~ 46170034 (+) False LOC120546960
XM_039782280.1 mRNA upstream 1124 46115387 ~ 46169075 (+) False LOC120546960
XM_039780379.1 mRNA upstream 57216 46079414 ~ 46112983 (+) True LOC120545790
XM_039780388.1 mRNA upstream 57216 46079414 ~ 46112983 (+) False LOC120545790
XM_039780414.1 mRNA upstream 117359 46047628 ~ 46052840 (+) True LOC120545810
XM_039819000.1 mRNA downstream 529452 46700722 ~ 46710505 (+) True LOC120570589
XM_039780638.1 mRNA downstream 830986 47002256 ~ 47054746 (+) True ppp1r13l
XM_039780646.1 mRNA downstream 830989 47002259 ~ 47054746 (+) False ppp1r13l
XM_039824246.1 mRNA downstream 914654 47085924 ~ 47114591 (+) True tmem91
XM_039824236.1 mRNA downstream 914654 47085924 ~ 47114591 (+) False tmem91
TU32370 other upstream 820862 45343458 ~ 45349337 (+) True G23999
TU31971 other upstream 2599185 43552207 ~ 43571014 (+) True G23673
TU31889 other upstream 2759789 43405893 ~ 43410410 (+) False G23605
TU31890 other upstream 2759789 43405893 ~ 43410410 (+) True G23605
TU31677 other upstream 3467154 42702541 ~ 42703045 (+) True G23411
XR_005636766.1 other downstream 830983 47002253 ~ 47054746 (+) False ppp1r13l
TU32859 other downstream 972522 47143792 ~ 47146369 (+) True G24405
TU32896 other downstream 1110548 47281818 ~ 47289020 (+) False spred3
TU32945 other downstream 1212961 47384231 ~ 47394967 (+) True G24478
TU33092 other downstream 1596566 47767836 ~ 47770071 (+) False ddx6

Expression Profile