RNA id: TCONS_00006753


Basic Information

Item Value
RNA id TCONS_00006753
length 2387
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_003450
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24716837 ~ 24756816 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTACAAGAGGTGTGACGCCGTGATatctctccctcacacacacacacacacacacactgaggtaTGTGCAAGACGCACCCAGGTTCATTTCACAGTCCAAACTCCTACCGTTGCTCATCCAGAGTCAAGAGTGCAGTGTGGAACTAGACGTCCTATGGAAATCAACTGATTTTGTTTACCGGATACACTTTTAGTGGAATTAATGTGTTACAATATGAACTTGTGAAGGAAGTGAAAACCGTGGCTTTGAATAACGCTTGACAAACAGTCATGGAAGGGAAAGAGGAGATCAGTGATACCGATAGTGGGGTTATTTTGCATTCTGGTCCGGACAGCCCCACCACAATGATGAAGGATGTAAAAACTCACACTCGGGTCATGAAACTCAAGCAGCAATCTCTGGAAGACAGGCTGAAAATGTGCTTAGTGGAGCTCAAGAAACTCTGCATCAGAGAGGCTGAGCTCACAGGACATTTGTCCTCAGTCTATCCTCTGTTACCTGGAGAAAAGCCTCCTCAGATTCGCCGGCGCATCGGAGCTGCATTTAAATTAGACGAACCAAGCATCCTTCACAGAACTGAGAACTCTGCGCTGAGCTCGGTGGAGGCTGATTTGGCTCTTCAGCAGCAGATCTATGTGGCGGCGCAGAGACTGTGCCAGGAGGAGCATCTCAGTAAGGGGGTGAAGAGGAGTCGACTGCAGCAGTACCAGCGAGAGGAGAGGAAACTCAAAGACCTTCAGGAGGCCGTTTTCAGACTGAGACTGGAACACGGACGATCCTCACCGCGGCCTGGCATAATCACACAGAGAGgtgCTTCAGATGACAGCTCCTTGTCAGACTCAGCTGTGCTTGAAGAGGATGAACTGTCCTCCCAGCTCTCCTCAGAGCCTCCCTCAGCTCCTGCTGTCGACTTTTACCCTCCGCCTATAGTCATCTCTCATGTTGCTCCTCATGCACCTGTGGGCCCCTCATACCGGCCCCTTCAGCCCCTTTCCTATCAAACCCCTCCCCAATCCCTGGAGAGCCTGCACACCTGCCAGAGTCCAGAGAACGACCCTGCACCCATCCAAAACTCACCCTGGACAGAGAGCAGTTTAGACCAGCCCTATCAGAAAATGAAAAGATCTCCCTCTGTCAAATCCAGTCCTTCTACCCCCACGTTGCCTTCTATAGAGGTCTGTCTTGCGGATGCTGGAATCCCATTGCAGATACCTACACATGCtgccctgaaacacacacagtcctgcaGCGCACCTTCCACTCCAGAGATGCACCTGCGCAGAAGACAATCCCTCAGACTTCCTATCACCGAACCCAACCATTATGAGCCCGAGCGGGATCGTGGGCACTTGAAGGGCCCCAGAAGACGCTTGACGGAATTCGCAGTGTCATCATCCGAATATTCCTCGATGCGACTGAATGTAGGAAACCCTGTATACTACTCCAGCTCAGAAGACAGCAACTCTGAGCACTCTTTCCAGTCGTATGCCAGCTCGCCCTGCCAGGAGCACCCAGGAGAACTTCCATGGACTCACCAATCCCAATACGGCTACCAATACGCCAGCCTCGCCGACAACCAAGTGCCACAAAGATGCTCACCTACGCACTTCTACAAGAACACTCAATACCAATCCTCACCTAGTTTCACAAGGGGCTACATAGAGGACGGATGGGGTCATGCTTTAGAAATGGACAGCGGGAGGTCGTATGTTAACCACCAGGCTCCTGTTTATTCTTCCAATGGTCACTATGAGTATTACTGTGAGGCTCTGCCATCGCAGCAACGGAGTTGTAGGTTGTTACCCGCCCATGTGAAACTGTCTCGGGCCCCTTCACTCAGAGAGTATCCTCATCACCCCAGCCGAGGCCTGCCCAGGCAGGTTGTGTCAGAGGAACTCAAATCATGGCATCAACGCAGCCAATTTCGACCGCCTCGACCACAATCGCTGGATCGGAACAGACAAGGAGCGCTCCGTATCCGAAATGTGCCTGGGCAAGAGTCCCCACTTTCACTTTCCCAACACCACAGGTACCAGGAACAACAGGTCGTATTGAGGACTCCAGACAGGTTGTATGAGGATGAATCAGAGGTTGCCAGTCAAGTGTGAAACTACCAAGATCCTTTAAAgaagtagagagagagagagtcctatttattcagtaatttattgaGCTGATGGACTAGAGTGTAgacttttttaattatatatgtgtatatgggAGTGTATGAGTTGTACTGTGAAAGACAATGTTTtatagactttttatagcagattaaCTCACTTATGGATTGTTTTGTACgattaaataaatctaatttgttACTAAGTGTGTTTTTACAATAGTGTTTGttgatactaaaataaaataaagttttaaaatta

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0034334 adherens junction maintenance biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-190 Predicted to be involved in adherens junction maintenance and positive regulation of protein ubiquitination. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in inflammatory bowel disease 29. Orthologous to human INAVA (innate immunity activator).

Ensembl:

ensembl_id ENSDART00000087740

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006744 lncRNA upstream 385042 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 385330 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00006743 lncRNA upstream 385330 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA upstream 386153 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00006737 lncRNA upstream 388424 24339393 ~ 24340922 (+) False XLOC_003446
TCONS_00006773 lncRNA downstream 143663 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00008401 lncRNA downstream 302646 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 425041 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 425276 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 454840 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006751 mRNA upstream 24909 24703108 ~ 24704437 (+) True XLOC_003449
TCONS_00006748 mRNA upstream 65315 24620818 ~ 24664031 (+) False XLOC_003448
TCONS_00006750 mRNA upstream 66119 24639743 ~ 24663227 (+) True XLOC_003448
TCONS_00006749 mRNA upstream 66561 24639743 ~ 24662785 (+) False XLOC_003448
TCONS_00006747 mRNA upstream 70852 24620742 ~ 24658494 (+) False XLOC_003448
TCONS_00006754 mRNA downstream 2151 24758967 ~ 24783118 (+) False XLOC_003451
TCONS_00006755 mRNA downstream 2263 24759079 ~ 24779596 (+) True XLOC_003451
TCONS_00006756 mRNA downstream 29562 24786378 ~ 24799675 (+) True XLOC_003452
TCONS_00006757 mRNA downstream 43340 24800156 ~ 24814537 (+) False XLOC_003453
TCONS_00006759 mRNA downstream 47740 24804556 ~ 24815193 (+) False XLOC_003453
TCONS_00006746 other upstream 148232 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006731 other upstream 383923 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006769 other downstream 124493 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006774 other downstream 145062 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006779 other downstream 224103 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 237917 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006782 other downstream 252827 25009643 ~ 25025592 (+) False XLOC_003461

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02643806_02653170.mRNA True 1944 mRNA 0.50 8 CI01000306 2643806 ~ 2653422 (+)