RNA id: TCONS_00006759


Basic Information

Item Value
RNA id TCONS_00006759
length 3069
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_003453
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24800156 ~ 24815193 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGAATGCAATTTCATAGAGAGGCAAACATCAGGAGGCTGGTTTAGACCTGCCTGTGTTCAAAGCTCCTGCTAGAGGTAAGCCGTCTCTGTTGTTCCGCTTCACTGCTGTTGTCATGTCTTGACTTTGACAATAAAGTGTGCTGTTTTGATTGAATATTTAACTTTTGGCTGGCAGGGAACTGAAGTGGAGGCTTCAGAGGTCTGGGACGGGTCACAGGGCAGTCTACTGATGTCAGGCCAAATCAGGTCTGCCAGTCATGCAGACTGCCGGGTCACAGAGGAATGCCACGTTCCAGCCGACGTGGAGCTGATGGAACTCGGGCCCCTGCTGGAAGAAAATGGCCCCATGGGGGCCAAAGGACTCCAGTCAGAGGGAGCAGGTGCTCttgctgatgatgaagaggaggatgaagaagTTGGAGAAGTTCTGACTCTGCCACTGCAGGCTCACCACGCAATGGAGAAGATGGAGGAGTTTGTGCATAAGGTTTGGGAAGGGCGTTGGAGGGTCATTCCCTTTCACGTTCTGCCAGAGTGGCTAAAAGACAACGACTACCTCCTGCACGGTCACCGGCCCCCCATGCCCTCCTTCCGTGCCTGTTTTGGGAGCATTTTCAGGATCCACACAGAGACCGGGAATATCTGGACTCATTTGTTGGGGTTAATCTTATTTTTGTGCCTGGGCACACTTACCATGCTGAGGCCCAATATGTACTTCATGGCCCCGTTGCAGGAGAAAGTGGTGTTCGGGATGTTCTTCTTGGGTGCAGTGCTGTGCCTCAGCTTCTCCTGGTTATTTCACACTGTCTACTGCCATTCTGAGAAAGTCTCACGCACTTTCTCCAAacTGGACTACTCCGGCATTGCTCTGCTGATCATGGGCTCTTTTGTACCCTGGCTTTACTACTCGTTCTACTGCTCTCCTCAGCCGCGTCTCATCTACCTCACAATCGTCTGTGTGTTGGGCATCGCCGCTATAATCGTCGCCCAGTGGGATCGTTTCTCCACTCCACGACACAGGCCCACCAGAGCAGGAGTTTTCATGGGTCTTGGATTGAGCGGGATTGTCCCCACCATGCACTTCACCATCGAGGAGGGTTTCGTCAAGGCCACTACCGTTGGACAGATGGGCTGGTTCTATTTAATGGGCGCCATGTACATCACCGGCGCTGGATTGTATGCTGCACGAATCCCAGAGCGCTACTTCCCGGGCAAGTGTGATATTTGGTTTCACTCGCACCAGATATTTCACGTGCTAGTGGTGGCAGCGGCCTTCATTCATTTCTATGGGGTTTCCAACCTGCAGGAGTTTCGCTATGGTCTGGAAGGAGGCTGCACTGATGACACTCTCCTCTGAGAACTTGTCAAACTCGCTCGTTTCAATTAGGATTAATAGTACCCCATTTATACCCATTCCTTCGTTTTATTTACCTTTAAGTTTTTCCTGATTGATTTAACTTAACTTtcattatttcacttttttttattattattattctgttacATGATTTAGTTTCTTTTGAAGAAAGCATTTGTGTGGTCAAAGGTATCCGATGGCTGGAACATGATAACCCTTGTTatcatcaaactttaattttGAGCACAATCTGAAAGTTTGAACCGACATGTTTGTTTTGTAGTGAAAAGCACTTTCATTGAGCTGTAGAGATGCGCCCTCATAATATAATGcattttgtttcttattgtaAATGAACAATTGAGATCATTCGATGCACACCCAAAGTATTGCCCCAATATTAATAGAGCAATGTCTTTGAGATGTTTTGTTCATAGCGATTTAACGCACAAAGGGCATATAAAGGGTTTGAGGGTAAAATCTACCTGCTTTGAACACTTGCGCAATTTTTAACCTTTACTTCTAGGTCAAATAATAACGTAAACAGGTCAACTGTTGCACCTTACAGCACAGATATTGAATATCATTGTTATTAAGGCCTCTGCATGGATCCATCTGTGCAGTCTGTAAAGTATAAACTTTcctgtaaagtataaaaatattccTGTGCCTTAGGCCACTGGAAATAGGTTTAAAATAGATGGGCCAAAACTACAGTGTAGTAAATTTCATTAGTCTCAGACATGGCTAGTTAATTTACGTCGCAAGCAATccaatcaaattattattattattattattattattattattattacgaaaTGTTACATTAATAACAAGAGTTTGATCTTTGAACTTTCTCAGACtgctgtttgtaaaaaaaaaaatacataaaaataaaaaagtagtgtttgatcctttttaaatgaataagCTAACTATGTGGCTTTACCACGGACTAAACAATCCATATATCCATGTGTTATGTGTAGAGGTGGtaaatcatttgcatttatttgaaatgtgaactgtttaaataaatatttatggatCATGTGTTGTTTCTTTTATTTGGAGGATCCATATGATGTAACCCCTGgaggttcatttttatttttcagggtttttgtaGATATTAcaggttttaaaatgtttacctCTCCTTTTCTTGGTTTAAGGACTTAAATCTTATTTGTACATATTTAAGTTACATTCACAGTTAAAAACGTGCATCTTTTTTATTCTCCACTTCAAATATCTGAATATCTTTGAATCACGATACATTTACTTGTGATGCAGGCAAACTGAACAAAATTAagtattttcaattaaattaaaataaatatgtcaataaagtctccccgtgttcatgtgggttttctcccagtgctctggtttcccccacagtccaaagacatgtgctattggtgaaatgagtaagctaaattagccgtagtgtatgtgtgtgtatggatggttTGCAGtattgggttgtagctggaagagcatccgctgcataaaacacatgctggataagttggcttttcattctgctgtggtgacttctgATAAAAAAGGGATCAAGTCAAAAAAAAGATTGTCATTAAGGTATTTCAATTgatttttctgtttgatttttcCATTGGGGGAATATTAGTTCTTATTTTGaactattttaaattaaagtagCACTACTTCTCTCTTCATCAG

Function

GO:

id name namespace
GO:0033211 adiponectin-activated signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-169 Predicted to enable signaling receptor activity. Predicted to be involved in adiponectin-activated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; digestive system; eye; fat cell; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; macular degeneration; and prostate adenocarcinoma. Orthologous to human ADIPOR1 (adiponectin receptor 1).

Ensembl:

ensembl_id ENSDART00000186283

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006744 lncRNA upstream 460252 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 460540 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00006743 lncRNA upstream 460540 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA upstream 461363 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00006737 lncRNA upstream 463634 24339393 ~ 24340922 (+) False XLOC_003446
TCONS_00006773 lncRNA downstream 85286 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00008401 lncRNA downstream 244269 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 366664 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 366899 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 396463 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006756 mRNA upstream 4881 24786378 ~ 24799675 (+) True XLOC_003452
TCONS_00006754 mRNA upstream 21438 24758967 ~ 24783118 (+) False XLOC_003451
TCONS_00006755 mRNA upstream 24960 24759079 ~ 24779596 (+) True XLOC_003451
TCONS_00006753 mRNA upstream 47740 24729346 ~ 24756816 (+) True XLOC_003450
TCONS_00006752 mRNA upstream 60524 24716837 ~ 24744032 (+) False XLOC_003450
TCONS_00006760 mRNA downstream 474 24815667 ~ 24817613 (+) False XLOC_003454
TCONS_00006761 mRNA downstream 734 24815927 ~ 24817521 (+) False XLOC_003454
TCONS_00006762 mRNA downstream 1045 24816238 ~ 24817637 (+) False XLOC_003454
TCONS_00006763 mRNA downstream 1323 24816516 ~ 24817283 (+) True XLOC_003454
TCONS_00006764 mRNA downstream 4131 24819324 ~ 24851464 (+) False XLOC_003455
TCONS_00006746 other upstream 223442 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006731 other upstream 459133 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006769 other downstream 66116 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006774 other downstream 86685 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006779 other downstream 165726 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006781 other downstream 179540 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006782 other downstream 194450 25009643 ~ 25025592 (+) False XLOC_003461

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02672497_02676431.mRNA True 1637 mRNA 0.46 8 CI01000306 2672497 ~ 2676907 (+)