RNA id: TCONS_00006782


Basic Information

Item Value
RNA id TCONS_00006782
length 726
RNA type processed_transcript
GC content 0.49
exon number 3
gene id XLOC_003461
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24994705 ~ 25043214 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taggtCTCTAGATGTCACTTTCTATATGCAGTGTTCAGAACAGAGCGATGATTGGGTGGAAATCCTGGAGCCTCGTCTCAGAGAGTACATGTATGTGAATCTGACCACGGGAATATGTGGTTGGGAACCGcccaaaaatgtattaatccgCCCAGCTGATCACAACCAATGGTGGGAACTTTTTGACCGTGTGACTGGCAGGTACTACTACTTCAACTCTGCTGGCAGTATCACAGTGTGGCATAGACCGCAGGGGGCGGATATTATCCCTCTGTCTTCCCTCCAGGCCATGAAACGCAACACAACGTTAGAACATAAAACTGATGAGGACACTAAGGAAAGGCAACATGGGAATCAGTCCACAGGCAGTCAAGATAGACACACCCCATTACCACCCGTGGAGCCCTGCACTAAAGAGCCAGAATGTGCCAGCAAAGAGCCTAAAGAACCAGAAATGGACAACAGACAGAAGCCAGACATCCACGTTTCAGACATCAACAAAGACTCACTCAGGCAAGAGCAAAGAGACTCATCTCAGAAGTGGCAGCCCTCTCCTGGATCTAAAGCCGCCATGTTGGTAAAGGTCAGCAGCATCGGCAGGAGCCAGACTAGAGAAACCAGAGGAACTTCTTTTCATCTCCCACAAAGCAAAGCCAGCGATCACAGAGCCTGCACACTCGCTCCTAGCAGTGGCAAACCTGTTACAGAATACAAATTTAAATGCAC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-4 Predicted to enable GTPase activator activity. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human ARHGAP39 (Rho GTPase activating protein 39).

Ensembl:

ensembl_id ENSDART00000170743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006773 lncRNA upstream 103768 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00006744 lncRNA upstream 665339 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00008611 lncRNA upstream 665627 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00008401 lncRNA downstream 33870 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00008612 lncRNA downstream 156265 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 156500 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 186064 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA downstream 186948 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00006775 mRNA upstream 16418 24907469 ~ 24993225 (+) False XLOC_003460
TCONS_00006778 mRNA upstream 17345 24966182 ~ 24992298 (+) False XLOC_003460
TCONS_00006776 mRNA upstream 39986 24925434 ~ 24969657 (+) False XLOC_003460
TCONS_00006777 mRNA upstream 43280 24957858 ~ 24966363 (+) False XLOC_003460
TCONS_00006771 mRNA upstream 103379 24900123 ~ 24906264 (+) False XLOC_003459
TCONS_00006786 mRNA downstream 18490 25044082 ~ 25063586 (+) True XLOC_003462
TCONS_00006787 mRNA downstream 38927 25064519 ~ 25139061 (+) False XLOC_003464
TCONS_00006789 mRNA downstream 75628 25101220 ~ 25140425 (+) False XLOC_003464
TCONS_00006791 mRNA downstream 86254 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006790 mRNA downstream 86254 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006779 other upstream 26145 24980919 ~ 24983498 (+) True XLOC_003460
TCONS_00006774 other upstream 106433 24901878 ~ 24903210 (+) True XLOC_003459
TCONS_00006769 other upstream 126298 24881309 ~ 24883345 (+) True XLOC_003457
TCONS_00006746 other upstream 428529 24580579 ~ 24581114 (+) True XLOC_003447
TCONS_00006738 other upstream 668912 24339396 ~ 24340731 (+) False XLOC_003446
TCONS_00006785 other downstream 12681 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006788 other downstream 70605 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006802 other downstream 270784 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 452151 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 455515 25481107 ~ 25482970 (+) False XLOC_003476

Expression Profile

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