RNA id: TCONS_00006794


Basic Information

Item Value
RNA id TCONS_00006794
length 1372
RNA type mRNA
GC content 0.40
exon number 8
gene id XLOC_003464
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25064519 ~ 25155003 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCACATCAACACTCATCTAGAGATGGGATCCCGCTAGTGGATATTGTTTGAGAAGATTTTGCCAGAACACATTGTGTTTTCAGGTTGTGGGGTCTTTGAATAAATCCATCAGACATGGTGATAAAATAAGCATGGGCTGTCTAATAAGCAGATTCTGGCCTCGATCTGATGTTCACAGACTGGAGGAAACTGTCTTGTTGCCTGATGGAGCTTCAGGAAGTCACACGGCAGTGGCCTTGTGCAACTTTCCATCCTTCAGGTCTGATGAACATACCATATGTTTAGGAGACAAGCTGAACATTATATCAGAAGATGATGACATGTTGAGGGTTTGCTCCACATCAACTGGCAATGAGTGTTTCATTCCTCACACTTATGTTTCCAAAGTCCATGACCAGTGGTTTTTTGAAGGGATCTCCAGGAGAAATGCAGAACAACTACTAATGCTGCCTCAAAACTACTCTGGATGTTTTCTAATTCGTGAAAGCCAGTCATTCCCTGGTTTGTATTCACTGTCAGTGCGACAACACAGTGGGCAAATGCACACTGTACTGCACTACAAAATCTATCAGCTCCACAACGGCTGGTTCTACATCCAACCAAACCACCCCTTCTCCACTCTCTCCCAGCTGGTGGACTATTACTCACGATCTTCTGTTGGTTCATTTTGTCATCTGACTGAGCCTTGCAGACTTCATGACTCCATCCCAACTGCAGCTCACAGCCCGTCACCAGTAGCAGCGCAGAAGTCCAATTTTAACTGGAGAGAATTGTCCacGTCGATGATTAAGAGGCAGTTAAAGGGAATGGATCAGGAGAGTCTGGTCAGCGAAGGACTTCGTGAGACTATGAATGCTTATTTTTATCTGGCAGAGGAGTCCAGCTTGGAGGACTAGCATAAAACAGACCTAGGAGACACTGATGACGTTATGTAAgggtcttttttgtgtgtgttttaaaccaCAGCACTTTGCTTAATATGTTATTATTGTGCGCCCGAAGtggaattaattattttgttaattgtgccattttggttgTTTATTGCTTTTTTGTAAAAAGTGAATATCGTTTTATTGTCATGTTTTTTGATTGCCGTAATTGATGGGATGCATTACCTTGGATAACTACAAATAAACTGGTCGATAGTGCAAAGAGAAAGCAATCATTAAAGAGCATACGGAATTTGATATAACGCAAATGAAATTGTGGATTTCAATGCGCAATTGTGTGCAAAATGGGAATaaatccaaaaaatgaaaattctttttaattttatgtttactTTGTTGAATTTCATGTGCTTAAaatctttgttttaaattttattttacgacaaaaggtaaaaataaaaaatataactgaTGTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-296 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within regulation of signal transduction. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SLA2 (Src like adaptor 2).

Ensembl:

ensembl_id ENSDART00000168368

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008401 lncRNA upstream 79397 25059462 ~ 25060098 (+) True XLOC_003463
TCONS_00006773 lncRNA upstream 233620 24900479 ~ 24905875 (+) False XLOC_003459
TCONS_00006744 lncRNA upstream 795191 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00006743 lncRNA upstream 795479 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA upstream 796302 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00008612 lncRNA downstream 26854 25181857 ~ 25189277 (+) False XLOC_003466
TCONS_00008613 lncRNA downstream 27089 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA downstream 56653 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA downstream 57537 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00008402 lncRNA downstream 101809 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00006787 mRNA upstream 434 25064519 ~ 25139061 (+) False XLOC_003464
TCONS_00006793 mRNA upstream 596 25129013 ~ 25138899 (+) False XLOC_003464
TCONS_00006792 mRNA upstream 9414 25112269 ~ 25130081 (+) False XLOC_003464
TCONS_00006786 mRNA upstream 75909 25044082 ~ 25063586 (+) True XLOC_003462
TCONS_00006783 mRNA upstream 96281 25010491 ~ 25043214 (+) False XLOC_003461
TCONS_00006795 mRNA downstream 2371 25157374 ~ 25180330 (+) True XLOC_003465
TCONS_00006797 mRNA downstream 102019 25257022 ~ 25266024 (+) False XLOC_003467
TCONS_00006798 mRNA downstream 104055 25259058 ~ 25266235 (+) True XLOC_003467
TCONS_00006799 mRNA downstream 121745 25276748 ~ 25291709 (+) False XLOC_003468
TCONS_00006800 mRNA downstream 123769 25278772 ~ 25289177 (+) True XLOC_003468
TCONS_00006788 other upstream 11633 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 98858 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 108249 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 113903 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006781 other upstream 113998 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006802 other downstream 141373 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 322740 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 326104 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 922944 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1449608 26604611 ~ 26614587 (+) False XLOC_003495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02898289_02901410.mRNA True 730 mRNA 0.42 7 CI01000306 2898289 ~ 2901484 (+)