RNA id: TU189159


Basic Information

Item Value
RNA id TU189159
length 210
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G140238
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 171459 ~ 171668 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggcgatatagaatcccatctaaagctgctggttaaaaagaaccgtaaatacagtaagatcatacttcacgtagggggtaatggtcgtaaatcggagatcactaaattgaatgttgagtcactttgtgcatacgcaaagacaatgtcggactcagtagttttctctggacccctgccaaacctgaccaatgatgaaatgtacagccgtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189158 lncRNA downstream 79 171174 ~ 171380 (-) True G140237
TU189157 lncRNA downstream 456 170572 ~ 171003 (-) True G140236
TU189155 lncRNA downstream 2298 168949 ~ 169161 (-) True G140234
TU189154 lncRNA downstream 4236 166958 ~ 167223 (-) True G140233
TU189118 lncRNA downstream 127254 44004 ~ 44205 (-) True G140202
TU189161 lncRNA upstream 46834 218502 ~ 218899 (-) True G140240
TU189170 lncRNA upstream 108879 280547 ~ 280863 (-) True G140249
TU189175 lncRNA upstream 137716 309384 ~ 309621 (-) True G140254
TU189185 lncRNA upstream 165874 337542 ~ 337763 (-) True G140264
XR_005641430.1 lncRNA upstream 196670 368338 ~ 369120 (-) True LOC120572356
XM_039823396.1 mRNA downstream 33222 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 428966 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 428966 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 734877 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 846590 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 846590 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_660 other upstream 207843 379511 ~ 379582 (-) True trnam-cau_27
unassigned_transcript_661 other upstream 208499 380167 ~ 380248 (-) True trnal-uag
unassigned_transcript_662 other upstream 210032 381700 ~ 381781 (-) True trnal-aag_3
unassigned_transcript_663 other upstream 211108 382776 ~ 382847 (-) True trnam-cau_28
unassigned_transcript_664 other upstream 211772 383440 ~ 383521 (-) True trnal-uag_1

Expression Profile