RNA id: TU189170


Basic Information

Item Value
RNA id TU189170
length 317
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G140249
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 280547 ~ 280863 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacaaaaacaactattagtgtgtttatgcacctggctctagagaaggagacagacctggagcaaagagaaggagccttaatcttccagccaactgcaggactcatctgaagatgacacaagtttctggtcTGACAAAATGgccactggtgtcctccaactctgtgagtgcctctaaccttcctctgaaagtggagaggacactgaagatcctgtccatcctaacattgaatggacagtgaagaattggcaagtctggtctccatctaatactgagacgctgcgcaacattcaagcaccgaccggcatgatgtcagag

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189161 lncRNA downstream 61648 218502 ~ 218899 (-) True G140240
TU189159 lncRNA downstream 108879 171459 ~ 171668 (-) True G140238
TU189158 lncRNA downstream 109167 171174 ~ 171380 (-) True G140237
TU189157 lncRNA downstream 109544 170572 ~ 171003 (-) True G140236
TU189155 lncRNA downstream 111386 168949 ~ 169161 (-) True G140234
TU189175 lncRNA upstream 28521 309384 ~ 309621 (-) True G140254
TU189185 lncRNA upstream 56679 337542 ~ 337763 (-) True G140264
XR_005641430.1 lncRNA upstream 87475 368338 ~ 369120 (-) True LOC120572356
TU189189 lncRNA upstream 92974 373837 ~ 374216 (-) True G140268
TU189191 lncRNA upstream 139153 420016 ~ 420235 (-) True G140270
XM_039823396.1 mRNA downstream 142310 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 319771 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 319771 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 625682 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 737395 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 737395 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_660 other upstream 98648 379511 ~ 379582 (-) True trnam-cau_27
unassigned_transcript_661 other upstream 99304 380167 ~ 380248 (-) True trnal-uag
unassigned_transcript_662 other upstream 100837 381700 ~ 381781 (-) True trnal-aag_3
unassigned_transcript_663 other upstream 101913 382776 ~ 382847 (-) True trnam-cau_28
unassigned_transcript_664 other upstream 102577 383440 ~ 383521 (-) True trnal-uag_1

Expression Profile