RNA id: TU189191


Basic Information

Item Value
RNA id TU189191
length 220
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G140270
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 420016 ~ 420235 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggttcatgaaaaaacacccgaaccgctcggttcgctagtctcggttcggagcgtgtgtgtaccgcacggttcgtcagtacactgttaatgtgcactaacctcttactgccgtagtgtccactttcgacacctatgttaaaacagttactggaaatgacgagcgggatgggcgtgacaaacgcaacccatggcagctgattggacgattgcgtcacatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189189 lncRNA downstream 45800 373837 ~ 374216 (-) True G140268
XR_005641430.1 lncRNA downstream 50896 368338 ~ 369120 (-) True LOC120572356
TU189185 lncRNA downstream 82253 337542 ~ 337763 (-) True G140264
TU189175 lncRNA downstream 110395 309384 ~ 309621 (-) True G140254
TU189170 lncRNA downstream 139153 280547 ~ 280863 (-) True G140249
XR_005641692.1 lncRNA upstream 692 420927 ~ 421529 (-) True LOC120573351
TU189196 lncRNA upstream 22421 442656 ~ 443015 (-) True G140275
TU189206 lncRNA upstream 79023 499258 ~ 499616 (-) True G140285
XR_005641418.1 lncRNA upstream 80005 500240 ~ 523058 (-) True LOC120572316
TU189213 lncRNA upstream 136167 556402 ~ 556667 (-) True G140291
XM_039823396.1 mRNA downstream 281779 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 180399 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 180399 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 486310 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 598023 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 598023 1018258 ~ 1429717 (-) False sorcs2
unassigned_transcript_679 other downstream 1010 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 2935 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 4148 415797 ~ 415868 (-) True trnam-cau_40
unassigned_transcript_676 other downstream 6577 413368 ~ 413439 (-) True trnam-cau_39
unassigned_transcript_675 other downstream 10208 409737 ~ 409808 (-) True trnam-cau_38
unassigned_transcript_680 other upstream 7168 427403 ~ 427484 (-) True trnal-aag_5
TU189195 other upstream 23315 443550 ~ 451670 (-) True G140274
TU189682 other upstream 1631246 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 3734689 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 3854416 4274651 ~ 4275274 (-) True G141027

Expression Profile