RNA id: TU189206


Basic Information

Item Value
RNA id TU189206
length 359
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G140285
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 499258 ~ 499616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAGCATCACTAGAGCCTTGGAGGGGTTGACCTCTCTAGCCACTGCTCCTCCAGCGTACTCCATGCCCCTGTTTGGGATGGAGGACGGTGATGAGACTGATTCAGACAATGAAGGAAGTGAATCACCAATGTAATGCTATGCTATATTAACCTTGCTTCTTCTTCCCCTAGTGCGGCCAATTGTTTACCAGTTTGAGGGCCATATAATCCTAAACTTAGTAGTATTCACACCTGAGGTGTGAAAAGGGGGAtctgtaagaaataaaaataatcagtcaagctggctgtgctgtatgaggatacaaattatagttgaatagtattgtgtgtttagtgtgtttagtggaagagcactgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189196 lncRNA downstream 56243 442656 ~ 443015 (-) True G140275
XR_005641692.1 lncRNA downstream 77729 420927 ~ 421529 (-) True LOC120573351
TU189191 lncRNA downstream 79023 420016 ~ 420235 (-) True G140270
TU189189 lncRNA downstream 125042 373837 ~ 374216 (-) True G140268
XR_005641430.1 lncRNA downstream 130138 368338 ~ 369120 (-) True LOC120572356
XR_005641418.1 lncRNA upstream 624 500240 ~ 523058 (-) True LOC120572316
TU189213 lncRNA upstream 56786 556402 ~ 556667 (-) True G140291
XR_005641701.1 lncRNA upstream 125597 625213 ~ 626442 (-) True LOC120573382
TU189229 lncRNA upstream 133111 632727 ~ 632947 (-) True G140307
TU189230 lncRNA upstream 134030 633646 ~ 633845 (-) True G140308
XM_039823396.1 mRNA downstream 361021 135443 ~ 138237 (-) True LOC120573587
XM_039823400.1 mRNA upstream 101018 600634 ~ 606718 (-) False LOC120573590
XM_039823401.1 mRNA upstream 101018 600634 ~ 606718 (-) True LOC120573590
XM_039823311.1 mRNA upstream 406929 906545 ~ 913680 (-) True LOC120573525
XM_039822700.1 mRNA upstream 518642 1018258 ~ 1429717 (-) False sorcs2
XM_039822701.1 mRNA upstream 518642 1018258 ~ 1429717 (-) False sorcs2
TU189195 other downstream 47588 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 71774 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 80252 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 82177 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 83390 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 1551865 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 3655308 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 3775035 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 3775035 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 3775035 4274651 ~ 4275274 (-) False G141027

Expression Profile