RNA id: TU189362


Basic Information

Item Value
RNA id TU189362
length 1896
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G140418
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1468232 ~ 1478813 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtggagataccGACCCTACGCCAGACCCTACgtcgtagcctgacgtgcacctctcgaaaaactTAACTACACGTGGCTCGGCCGTGTCCTGGTAGTGTTGCATTctcgttctcgcgatagtacggcacgttctcacgataacacgccacgtgtaGGTTTACAgccactgtatacagcgtagacattcacgtggatagctcaaaatgcgtacagataacacgccatttggctttaggaaagtagccgtgtatgtttacgcaaagtcatgatgtcatgttggactctagagtcgctactcactctgaagataatcaccatcactctctcaacCACATATTTAAAGACGtgtgaaagaaaaacattaaaccaAGCTGCTTTAATCAGTTTAATCTGATGCCGTGACGTAATTACCCCAATGGTTTACAGATAAGATGTGACATCACCGTCAGGCACCACTGAGCCAATTCGAAGCGTGAGAACCTTACAATTACCGACGCGGTCTTACCGGAGCCTGATCGCATCCAAAAATAAAcaaggaaaagatgttttttactCAGAAGGAACTCCGTACAAAGTGCAATTTTTCTTTAACTCCTCAAGTACGGTTCCCTGCTATATTCACAGAATGAAAACACAACTCACAAACAGGACAGGAGTCAAGTTATTATAACATTATTAGGGCTTTAGCAAAAGTCCGGAATGATCCCAGCAgttcagaatcagctttatggGGATGAATTTTACATCATAGCTCACCCAAAACATTAGAGGGGGTTTACGGTCActtgttttaactttttctgAAACATCATATTTCTCTTTCGTTAAGATTAACTGACTCTGACACTGAAATTCTATTGGAAGGACTGTGAGCCAGACAAAGCGTGTGTGTAAATGCGTCTGTTAAAAACTGGGTGGATACCGTCCGGATATAAAGTTCGGTTCAGTTGGGCTCCCGTCTCTTTTGAGCCTGGACCAGCGTGCTGGACCCGAGCTCGTCCAGCACTCAGGGCAACCGAGCTGATCCCGCTTGGTCACAGTCGCGTCAGCACTTCTAGGAGGCTTTGGCCACGCCCACCAATGCTGGCCTGAGGGTTCGACCGTGAAGCTTGTAGCCCACTTTGGTTACTACGGCGACGGTGCCGGGCTCCTTGCCCTCCACGGGGGCATGGAAGAGGGCCTCGTGCTCGTAGGGGTCAAACTTCTGCCCGTCGGGGTTGAGCTTGACCAGGCCATGCTTGGTGAAGACCTTCTGGATCTGGACCTCGGTCATCACCAGGCCGTCGTACAGGTTCTTCAGGTGGGGGTTCTGGCTCGTCACCTCCTCCTTGGGCACGCTCTCCGTGGCCTTCTCTAAGATGTCGGCCACTTCCAGCAGGTCCTTACAGAAGCCCTGGATCCCGTATAGTTTAGCATCTTCGATCATCTTCTGACTCCTGGTCCTGAGGTTCTCCGTGTCGGCTAAGGCCCTCTTGTACTTTTCCGTCATGTCTTTGAGCTGTTCCTCCAGCTGGGTCTCTGCTGCACTCTGCTCCGGCTTCTCAGCCTCCTCCTCTGACCCGTGGCCGTTCTTCTGCTGGGTGGCCGTGCATAACAATCGTGGAGACGCTCTTATCAGCGCTGGCGAAGATACAATTGAGTAGCTCTGTCTCACTGCCCGCACACACCAGCTCGCCATTTTTTCAGACTGTAACACACGCTGAACATGTATTGGAGGAGCGCTGAGGCACGAAGGGACGCACAATGATGACGGCAGGCGGCAGCGTACGGTCTGAGCCAATCAGGAGTCAGTAAGAAGACCACCTCTTCCATTTGACAAATCCGATTCAAAGAAGAGTTTGACGACAAGTTGTAGTTTGGTTGAGTTGACGTTAAAGGTGAAAGCTGCACGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189356 lncRNA downstream 5367 1461638 ~ 1462865 (-) True G140413
TU189346 lncRNA downstream 148657 1290908 ~ 1319575 (-) False G140404
TU189345 lncRNA downstream 176944 1290908 ~ 1291288 (-) True G140404
TU189342 lncRNA downstream 313290 1154243 ~ 1154942 (-) True G140401
TU189341 lncRNA downstream 313521 1116986 ~ 1154711 (-) True G140400
TU189389 lncRNA upstream 2925 1481738 ~ 1482705 (-) True G140437
TU189384 lncRNA upstream 3100 1481913 ~ 1482667 (-) False G140437
TU189390 lncRNA upstream 3989 1482802 ~ 1485299 (-) False tada2b
TU189404 lncRNA upstream 41008 1519821 ~ 1521839 (-) True G140451
TU189407 lncRNA upstream 51422 1530235 ~ 1530950 (-) True G140454
XM_039822700.1 mRNA downstream 38515 1018258 ~ 1429717 (-) False sorcs2
XM_039822937.1 mRNA upstream 3976 1482789 ~ 1488426 (-) True tada2b
XM_039822938.1 mRNA upstream 13461 1492274 ~ 1500316 (-) True LOC120573289
XM_039823242.1 mRNA upstream 71715 1550528 ~ 1574124 (-) True slc1a1
XM_039823148.1 mRNA upstream 147078 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA upstream 147078 1625891 ~ 1649432 (-) False tspan5a
TU189195 other downstream 1016562 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1040748 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1049226 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1051151 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1052364 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 572668 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2676111 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2795838 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2795838 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2795838 4274651 ~ 4275274 (-) False G141027

Expression Profile