RNA id: TU189404


Basic Information

Item Value
RNA id TU189404
length 2019
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G140451
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1519821 ~ 1521839 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAAAAGTTGGAGCAAAGATCAGCTGAAGTTCAGGCTGAAAACATGAAGGTGCGTCAGAGGATTCGGAAAAAGAGCATCCGAAGTGGGAAGAATGACCGAAAACCTTTTGCCTGTGGCTGTTAACGGTGGTATAACGGCGATATGTGGCCTTGTAGGGGCTCATTTTCTAAGTCTCCAGTGCCCCTTCAACCCCTGAAGAGAAAGACAGGTTAGAGTACTCCATCTTCCAGTCAGCTGATCACTGTGAGAGGAGTTGGAACATATGGAGAATACACTTCAGACTACACAGTACAGTCTTCAGATACAAGTAACGATAGaagctgcagagagagaagaaaggccTCATTTAAACTAAACCATCAAGACTCACTAAATCTGCAGTTTTTgtttacacattttaaattggAGACACAAATGATCCTCCCAATCTGAACTCCTCAGTCAGAATGCATTTTAATTCTCTGAACATGATGCTGCTTctaaatctgttattttactgTATAAACATAGTTTCAGATACAGAACAGAAAACAAGTCTGATAAACTTTGATATAAAGAATGTGCGTGCCAACTAAGAATAAATTATTAGTAAATCAGAAGTGACGTACCAGTGCTACAAGATGACAGCAGCTGCATCTGATGCACCATTATGGGAACCGTGCtaatgtttcacaataaaagccttgATAGGAAACGTATGTACGTacgcacacactttttttttttcttctgattgGTCACCAACACAGGACAACATAATATCTGCCTGTACCATACATGTATCCATTCAGAGTCTGGTCCTACAGTGGGCACCACAGTGTGGATATTTAGCACATATTTAAGTCAAGtctctgtttttattgtagtttatattctgtattttacttcttgtttgctgctgcaacacaaatATGCCCtgttgggattaataaagtactcTATCCATCTATTACAATGAAGATTTGCACTCTTAAAATTTCTAtaactgtgttttgtttgtccCTAGCTGGGACTCTAGCTGCAGAGTGGACAGCTGATGATCAGACGACTTAATATGGAAAGGAAAAGGATCAACTGAAGCCACGCTGCTCTGCTTCATTTTCTACAGAGACAGTTGTCATGGCATAAGCAACCCTGGGCAACATGATTAATCTGGTTAGGTCTAGGATTGGACTCCAACCCTAACCCAGGAAACAGACCGCTGCTTGCAAACTCTTTGTGCCTAAACGGGATGCGAAGAGGGGCAGTGGGCgaccgtggaggtgggctgtagGCTGCCCACCCAATCAGAAGTTAGAAACGACTATTTTTTCCATTGGCTGAAcacattttctcttttgtttacCGCTGTCCTTAGCTACCCTCCAACTTTCATCTACAGTAGAATATTCCCCCAATTTCTACATAGAATGTGTTAAATTCATGTTAAAGCTTtggtgtgtaactttttgatattaatgaacatccgttacattcaagccattgcctaataagttgctacaaagcttaTTCAGAATCAAATCGAATTCAATCAGCTCCacccaactctctctggatttctcagtatgactatgttcagaagattggggcgtccggcgactttctgAAGATAATGacttcttctgaagagtccgtcatggttttttaatcctccgtgtcctccttggctactagcaactgtgtggaggagctTTCATTTCTTATATTGGGACTATACTCTCAAAACGTTTAATCTTTTCCAAGAATTCCAGGGCCAGTGACAAAAATGCTCATGTTGGGACTTTATCCtgctttaaaactttttttaaatgaatagatTAAGCACCAGGCTGACAGCTTGAGCTTCTtgctaaaaggaaaaaaaaaacattttctgtaaTAATAACATATATTCTGCTAATAGTTGTAGCAAAATTGAACTTTCCATTAGCTGTTCAACTAAGTTATTACCCATTACAGGAGGCACAAAGtaaacatttcaataaatagctggttaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189390 lncRNA downstream 34522 1482802 ~ 1485299 (-) False tada2b
TU189389 lncRNA downstream 37116 1481738 ~ 1482705 (-) True G140437
TU189384 lncRNA downstream 37154 1481913 ~ 1482667 (-) False G140437
TU189362 lncRNA downstream 41008 1468232 ~ 1478813 (-) True G140418
TU189356 lncRNA downstream 56956 1461638 ~ 1462865 (-) True G140413
TU189407 lncRNA upstream 8396 1530235 ~ 1530950 (-) True G140454
TU189451 lncRNA upstream 101420 1623259 ~ 1639611 (-) True tspan5a
TU189455 lncRNA upstream 141182 1663021 ~ 1663252 (-) True G140492
TU189483 lncRNA upstream 198086 1719925 ~ 1725333 (-) True G140514
XR_005641667.1 lncRNA upstream 253998 1775837 ~ 1779726 (-) False LOC120573239
XM_039822938.1 mRNA downstream 19505 1492274 ~ 1500316 (-) True LOC120573289
XM_039822937.1 mRNA downstream 31395 1482789 ~ 1488426 (-) True tada2b
XM_039822700.1 mRNA downstream 90104 1018258 ~ 1429717 (-) False sorcs2
XM_039823242.1 mRNA upstream 28689 1550528 ~ 1574124 (-) True slc1a1
XM_039823148.1 mRNA upstream 104052 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA upstream 104052 1625891 ~ 1649432 (-) False tspan5a
XM_039823278.1 mRNA upstream 138298 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA upstream 138298 1660137 ~ 1661012 (-) False LOC120573508
TU189195 other downstream 1068151 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1092337 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1100815 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1102740 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1103953 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 529642 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2633085 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2752812 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2752812 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2752812 4274651 ~ 4275274 (-) False G141027

Expression Profile