RNA id: TU189483


Basic Information

Item Value
RNA id TU189483
length 824
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G140514
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1719925 ~ 1725333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggTGTTTGGATTTGAATATTTATCTCAGCATAGACCTCCTGTAGCTCCAaatatatgttaaaaaaagcagtTAGAGTTCTGTATACAATGTGAATCATAATGCGGACGGTGTCAtattatgtaaatgtatattatCCTATTGTCTTATGACagtatttgactttttctgcatgtgtgtgtgtgttttttttgatgAGTCCCCCCTTCTCTTTCTGCTGCTGTGACTGCTGTGCTGCAGTCGGTAGGTTTTTCTAGCCTGGGCTCTCTCCTTCTCCAGGACCTCAGTGTCATCCAGAATCTCCAGGCCTGGGATCTGACTGATGACATACTGTCTGTAGTCTTTGTACTGGGTCAGACTTCCTCCGTTGAAATAGCTAGGTGCTGCCTCGTTGTTCATCATACTGAGAATCTTTATGTTCGGGAACTTCCGTCTGATTTCTTCCACAAACACAGGCAGATTGTTGATCTTGTTCTTGTTGATGCACACTGTGGTGACACTCGGCATGTAGGGGAACTTGATGTGAGATGTGTAGTTGTTGCAGTCCAGGATCAGAGTGCTGAGCTTCTCCAGCTGACCCAGCAGAGCCGGGTTTCATCCAGCAGATTGTAACTCAGATCCAGCACCTcgagtgtgtctgtttgtgttagAATGGCTTCATTGGGGATTTCGGTCAGGCCCTGGTGAGCAAAAGAAAGCCACTGAAAGCTGGGTTGACTGTGTTGGCCCGAGGTATGATGattcatgataaaaaaaacttcTTCTTTAGTTCCTCTCCACTTGTATTAATGGAGATTAGGAGAGGAGTCAGATGATTATGTCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189455 lncRNA downstream 56673 1663021 ~ 1663252 (-) True G140492
TU189451 lncRNA downstream 80314 1623259 ~ 1639611 (-) True tspan5a
TU189407 lncRNA downstream 188975 1530235 ~ 1530950 (-) True G140454
TU189404 lncRNA downstream 198086 1519821 ~ 1521839 (-) True G140451
TU189390 lncRNA downstream 234626 1482802 ~ 1485299 (-) False tada2b
XR_005641667.1 lncRNA upstream 50504 1775837 ~ 1779726 (-) False LOC120573239
TU189515 lncRNA upstream 50608 1775941 ~ 1782596 (-) True LOC120573239
TU189518 lncRNA upstream 61971 1787304 ~ 1788089 (-) False G140534
TU189519 lncRNA upstream 61971 1787304 ~ 1788089 (-) True G140534
TU189521 lncRNA upstream 65377 1790710 ~ 1790942 (-) True G140535
XM_039823278.1 mRNA downstream 54980 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA downstream 58913 1660137 ~ 1661012 (-) False LOC120573508
XM_039823148.1 mRNA downstream 70493 1625891 ~ 1649432 (-) False tspan5a
XM_039823147.1 mRNA downstream 70493 1625891 ~ 1649432 (-) False tspan5a
XM_039823242.1 mRNA downstream 145801 1550528 ~ 1574124 (-) True slc1a1
XM_039822828.1 mRNA upstream 24186 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA upstream 24186 1749519 ~ 1774892 (-) True aco1
XM_039823219.1 mRNA upstream 158569 1883902 ~ 1885687 (-) True LOC120573473
XM_039821465.1 mRNA upstream 294279 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 297686 2023019 ~ 2032506 (-) False LOC120573528
TU189195 other downstream 1268255 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1292441 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1300919 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1302844 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1304057 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 326148 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2429591 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2549318 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2549318 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2549318 4274651 ~ 4275274 (-) False G141027

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2001256 True 2204 TUCP 0.44 4 NC_048585.1 49606153 ~ 49609580 (+)