RNA id: XR_005641667.1


Basic Information

Item Value
RNA id XR_005641667.1
length 3780
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC120573239
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1775837 ~ 1782596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atctaattatcgatatcgaccgatatgaaacacttacatcgtgatacagttttcagccatatcgcccagccctatggggtattattatttagcTACAAACTGCTCCTCCGAACCTAGAGCCTGGTCCTAACTTATATACTACTCGTAGTAAGTGctacaactagttcaatcaacccagggtttcccaatccagcgcattcacataaaagaggcggtgtttggaCAGCATGGCCAattgcaaacatctaccagttattttaaataagaagatatcacttccccatctaAGATGCACAAGATGTAAAGGCTTCTAGGATtggttgataactcaaacttgccgagacaCCCATTTGATTACATAGACTCAGTTACACAGACTGTTACgttctcgttcagtagcctggtgacagcctacctaccaTGCAGCctgcaacattcacttctctaacatttaacttaacataactaccaagataacatgacgtgtatttgtatgtgatgtacttaatgtgtgaattgccatgaacacaatcctctaagatgcaccagaaacaaggcttggttacAAGTGAAACACCGTTATGataaaccctgggttgaacctgaagttaccttgttaacgccaaatcttgcgtCGTAGTCCTGCAGGACTCaattccacatttttcacaatggTGTCAGGTCAATTACCTTCTAActaaacaaagacaaaacaaaagagcTGGTCATCTACACATCCAAATCACCACCTGGACTGAACCATACCCACATCCACGGCCAACCAGTTGAACAGGTCAGCAGTTTTAAATACCTGGGACTCATTATAAACAATAAACTCAACTTCAAGGAACATGTCACTACCACCCTGTTCTTACACAATGCTAACCGCCACCTGCAAAAACAAACTCACTAACATCACACATATTGCCTCCAAGGTAATCAGTCTCCCCACACCCAGCCATCACACGCCTAGCACGTACAATAGTAGCTGACACATACCGTCTGCTGAGTCAGTTCTTCACACTACAGTCATCTGGCCGCAGATACAGAGCACTGAACCTAAAGCCTATttcaaaaaaaggttttgtcCCCACCGCCATCACAGTGCTGAACAAACTATAATTCTGCCACCACCACCCCAGCTGCTTTGTAGTTTTTCACATTtgatgtgtctatgtgtgtgtcttaatATGATGTGTTCTTTTTAGTGTGTTACATGTTTTATGTGTGCTATGGAACATGAAAAGATGTGTGGAAATGATTATGATTTTTATAATTATCTCAATGTTATGTTCTGTATTCCCATGATATACGTATAGCGCAGTGAACAACTGTTCtcattcatttttgtattgAAGACAATCCAAAAGTACATGTTAAACAGTGTGTTGCTGTTTGCAGGTTCTACAAAGTCCATCCTCATGCTTGCCCATCTTTGCTAGATCCCATGCAAGTCCACAATGCCCGAGTCTCAGCCTTGTCATTAGTGTCTTCTTTCTTTGCCCAAATAGCACTCCTCTGTCTGTACCctattttgaattgaaaaataaCGACGACCCCTCTTTTCCTTTTCCCACTGCCTTTGCCACACTGCTGTAACATTTTTTCTTAATGACCGATTCAGATATCCCAACACATACCCTTAAATCAATGTCTCTTTTCAGTGCCATTTTAGCTGCCTTATCTGCTATCTCATTCCCGAAAGGCACCCACAGAAATCCCACCAATGCCAGGGGGACTACTACCTGTTTTTATGGTTTTTATAGGAGGCCCTGCTGCAGTGATTGGCCAAAAGAACACCAGGTAGTTATCAGTTAAACTCATACTGCTAGACATATGTCTGTCTTGTTGAGTTTTTGCTTCTGGCCCTGGTCTATAAAAACCACCTCAAAGCCAGATGGTGGACCCACAGCCCTCTGATATTCATTTACACTCACTTCAGTTTGAGATTTGATGCTCAAAGGTCTGAACTTGTGTGCTAAATGTGACCTCTGTGGAATAACAGTTTTACAAAGCACATGGTTCAGCGGTGCATTGGGCTGCAGTGGGAGATGCTGGATCATCAACAGAATACTACTGACACACTGACTCTCATGTTCAGTAACTGTTCATGTTATAACTGATTGTTAAAGTTTGTAAAacattacatatattatatagtattgtgtgttgttcTCTCAGATGTGTGTGAACTGGAACTGGACCCAAACACAGTAAACAGAAGTCTCAAACTGAAAGGTGACATATTATATAGGTGTTAAAGGATGAGCCATATACCTGATCATCCAGCTGggctcagctgctgtgtagagatggtctgactggtcgctgttactgggagggcGAGTGGAGAGGAAAGGTTTCTAGATGAGTGAGTTCCAGAGGAGTCAGCAGGAGAGGAGCCAGTGAAGACTGgtatcagtcctggagtctggaGTGCTCTGATGATGTTTACTGTGTCTGTCACAGACCTCACTTCCTTCAATGGTCTCTAACAGAGTAGCAGTGGATGTGGACTGACCTGCTCTCCTCTGACActctgatccacctccacacctgcAGCTCCACATTCACTCTGCCTCTTTATCCTGGGTTTAGGTTGGGGTCtagttcctcagtgtctctgcgTCCTCTCTGCAGGTCTGAGAGTCTCTCCTGTGGACAGAAACACTGACTGAAGATCAGCTGCTGAAGCAAAAGTTCAGTCTGTTCTCCATTACACACATTCTGCACTGTCGAGCACATCTGTCTCAGACTCTAACACAAATCAGTCGTATGTCTGATTTCACCTCTTAGATTATCACCGTTTTAACTGTTTCACTAGAAACACTTAATGATTTATGGCTGGCTCTCTTTATGAGTTTCAAAGCATTCAACATCATCAGAAAGTTTTTAGACATAAACAAAATTGTTTTGTGATGGTCTggttttttgagtgttattcACACTCAGCTGCTTTAAATTATAAGTGAAAAGTCCACAAAGGAAGAAAATATGTTGAACTTGTTATggtttgctctctctctgccctgagttgggtgttttttttccctgtttgtctgtgtgttctgtgttttttcCACCTGGAGTGCTGGAGGCGTGTCCGGAGGAAAGTAGGTCAAGGGGCGTGGCTGATCCAACACTGCACAGCCGGTCTTCACAGCTGCAGCTCATCTACTTGATTCACTCCAGCAATACTTAAACCTGGGCTGATCACCTCTTTGACGCCAGTTCATTATCGACAACATATGTGtTCCCGCTCTGACCTGGTGCTTCCTCCGCTGTGCCTGCATGCTTCAAGCCTAACCGTCCAGCCTCCGTCTCCAACCTGGGATACCATCTGTGTACTCATCTCTGCCTGTTCACCTCGTGTCCCATAACAACCTGGACTCTTCCCCGTCGGCTCGCCTCTAGCCTCAGACCAGCCAGGAGTTTCCCCACCCTGACACTACCTGCAGTGTTTCCTGAGTACACTCTGCTCCATTAAACCTTTTGTAACTACTTTACGTTGTCTGTGTAATATCTCTGCGTTCTGGGTCAGACAAGCCCCttaacagaactataaaacaacaataactaGAGAGCATACATATGTGATTCTGTGGGATGGGGAATACACTAAACACTACACACAGCTGAGTGAATGTAATGTTACATTACGTTTTGGGTATATCTGTGTATATGTAGCCTATACAAGTTGTACCAAGAGCTTCTGTGATATCAATTTGTGTTGTAAtaaactttttaaataaaaactctgAGGCTGTTactaaaatatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189483 lncRNA downstream 50504 1719925 ~ 1725333 (-) True G140514
TU189455 lncRNA downstream 112585 1663021 ~ 1663252 (-) True G140492
TU189451 lncRNA downstream 136226 1623259 ~ 1639611 (-) True tspan5a
TU189407 lncRNA downstream 244887 1530235 ~ 1530950 (-) True G140454
TU189404 lncRNA downstream 253998 1519821 ~ 1521839 (-) True G140451
TU189518 lncRNA upstream 7578 1787304 ~ 1788089 (-) False G140534
TU189519 lncRNA upstream 7578 1787304 ~ 1788089 (-) True G140534
TU189521 lncRNA upstream 10984 1790710 ~ 1790942 (-) True G140535
TU189522 lncRNA upstream 11314 1791040 ~ 1791662 (-) True G140536
TU189545 lncRNA upstream 32794 1812520 ~ 1839129 (-) False G140548
XM_039822828.1 mRNA downstream 919 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 945 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 110892 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA downstream 114825 1660137 ~ 1661012 (-) False LOC120573508
XM_039823148.1 mRNA downstream 126405 1625891 ~ 1649432 (-) False tspan5a
XM_039823219.1 mRNA upstream 104176 1883902 ~ 1885687 (-) True LOC120573473
XM_039821465.1 mRNA upstream 239886 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 243293 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 674341 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 674341 2454067 ~ 2573483 (-) True camk2d1
TU189195 other downstream 1324167 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1348353 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1356831 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1358756 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1359969 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 271755 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2375198 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2494925 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2494925 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2494925 4274651 ~ 4275274 (-) False G141027

Expression Profile