RNA id: TU189559


Basic Information

Item Value
RNA id TU189559
length 394
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G140553
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1829812 ~ 1835425 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAttgataggttggatatttcagcctacatgtttcaaatgtattttatatcttgtatgtagTGTACCACAcaagaaggttagtctggggacaaccttcacccacaagaatgtgtaaatctattatgagtttgggtacaactttcacacagaggaattggagccaggaatgtgggaatctattaggagcatcggccataaaaggtgtagtttaagaGTAAAACGTGTGCACTGAAATAGATGTCTCGTGCTGTGtaagcacaaaaagagtttaaaaggtatTCACTATGATGTACATGTTGGTTATCCTTGGGCAGACGTGTCTGTATGCTCATGGTTgtcccagtgtcatgaaagtttgttcactgtttgaataaagctgcacttgatttgtaa

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189546 lncRNA downstream 6365 1817057 ~ 1823447 (-) False G140548
TU189548 lncRNA downstream 6365 1817057 ~ 1823447 (-) False G140548
TU189522 lncRNA downstream 38150 1791040 ~ 1791662 (-) True G140536
TU189521 lncRNA downstream 38870 1790710 ~ 1790942 (-) True G140535
TU189518 lncRNA downstream 41723 1787304 ~ 1788089 (-) False G140534
TU189555 lncRNA upstream 39933 1875358 ~ 1882805 (-) True G140552
TU189556 lncRNA upstream 39933 1875358 ~ 1882805 (-) False G140552
TU189557 lncRNA upstream 39933 1875358 ~ 1882805 (-) False G140552
TU189582 lncRNA upstream 57984 1893409 ~ 1893793 (-) True G140572
TU189619 lncRNA upstream 65602 1901027 ~ 1905267 (-) True G140597
XM_039822828.1 mRNA downstream 54894 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 54920 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 164867 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA downstream 168800 1660137 ~ 1661012 (-) False LOC120573508
XM_039823148.1 mRNA downstream 180380 1625891 ~ 1649432 (-) False tspan5a
XM_039823219.1 mRNA upstream 48477 1883902 ~ 1885687 (-) True LOC120573473
XM_039821465.1 mRNA upstream 184187 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 187594 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 618642 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 618642 2454067 ~ 2573483 (-) True camk2d1
TU189195 other downstream 1378142 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1402328 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1410806 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1412731 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1413944 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 216056 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2319499 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2439226 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2439226 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2439226 4274651 ~ 4275274 (-) False G141027

Expression Profile