RNA id: TU189582


Basic Information

Item Value
RNA id TU189582
length 385
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G140572
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1893409 ~ 1893793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtttcctcaggagggtggctggcgtctcccttagagatagggtgagaagctcagtcatccgtgaggagctcggagtagagccgctgctcctttgcgtcgaaaggagccagttgaggtggttcgggcatctggtgaggatgccccctgggcgcctccctagggaggtgttccaggcacgtccagctgggaggagaccctggggaagacccaggactaggtggagggattatatctccaacctggcctgggaacgcctcgggatcccccagtcagagctggttaatgttgctcgggaaagggaagtttggggtcccctgctggagctgctccccccgcgacccgacaccggataagcggacgaagatggatggatggatggatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189555 lncRNA downstream 10604 1875358 ~ 1882805 (-) True G140552
TU189556 lncRNA downstream 10604 1875358 ~ 1882805 (-) False G140552
TU189557 lncRNA downstream 10604 1875358 ~ 1882805 (-) False G140552
TU189568 lncRNA downstream 10954 1834599 ~ 1882455 (-) True G140559
TU189545 lncRNA downstream 54280 1812520 ~ 1839129 (-) False G140548
TU189619 lncRNA upstream 7234 1901027 ~ 1905267 (-) True G140597
TU189620 lncRNA upstream 7234 1901027 ~ 1905267 (-) False G140597
TU189656 lncRNA upstream 13452 1907245 ~ 1908644 (-) True G140601
TU189625 lncRNA upstream 33339 1927132 ~ 2030369 (-) True LOC120573528
TU189640 lncRNA upstream 33339 1927132 ~ 1932596 (-) False LOC120573528
XM_039823219.1 mRNA downstream 7722 1883902 ~ 1885687 (-) True LOC120573473
XM_039822828.1 mRNA downstream 118491 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 118517 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 228464 1660137 ~ 1664945 (-) True LOC120573508
XM_039823279.1 mRNA downstream 232397 1660137 ~ 1661012 (-) False LOC120573508
XM_039821465.1 mRNA upstream 125819 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 129226 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 560274 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 560274 2454067 ~ 2573483 (-) True camk2d1
XM_039821763.1 mRNA upstream 560274 2454067 ~ 2573483 (-) False camk2d1
TU189195 other downstream 1441739 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1465925 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1474403 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1476328 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1477541 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 157688 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2261131 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2380858 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2380858 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2380858 4274651 ~ 4275274 (-) False G141027

Expression Profile