RNA id: TU189620


Basic Information

Item Value
RNA id TU189620
length 1747
lncRNA type inter_gene
GC content 0.38
exon number 6
gene id G140597
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1901027 ~ 1905267 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAAAGGAGTATCTTATCGAGTGCCACAGTATCAGTGTTATAAGAGGCCTACTAAGGGGTGGCTGGTTGAACCAGCACACATTTTGCAGTTGGCAGTGCCTTACCTCCAACACCAGCAACTGGAACTGAAGCAGCTATTGAGGTTGTGTTCAATAGGACTACTCCTATTGCAGATCTCCCACAGAATGATGTCATTGCTGAAGTCTTAGTAAAAGCTGTGACTAATACAAACAATACCTTCAATGTCAGCATAAATCCAGCTTCAGTCAAAGTAGTAGaAGGACCAGTTCCAGCTACAACCacagcacctacaactgctgcacctacgACTGCAACAGCTACATCTACCTCACTAACAACTGGCATATCAACTACTGCttcacctacaacagcagcacctatcactgctgcacctacaactgcagcacctacaacagcaagGGTGTCTTTCAGATCTGTTCTAAGCACATTTACAAATGACTTGCTAAATCCATCATCTACAGCTTTTAAAAATCGGGCTGCAATGATAAAGGGACAGCTTGAACCTGTTTTCCATAGGACATTCCCTTACTCCTTCATGTTCTTCAGTGGATCGGTCATCAACACCATAGACCTTAACTTTGTAAGCCCATTGGCTCCTAATAACACTCAGATTGTAAGCGCTTTGATCAACGCAGCTTCAATCGTCAGTGGCTTCGACATTGAAGGCAGCTCCATCAACGTGAACGGCATCTCGTCAAGTGGAGTAAGCCAGAAGATGAGTCTCGTCACCgcatcctgccttgtactgttGTCATGGCTACTGTCAAGCCAACAATAGCATCTGTGCTGATTCTTGAATGTCTGAAGTCTTTTACAGCTTTGGATGAACGTGCTGTCAAATTCAACTTTTAAGCACTTGGTCAATTGAACCATTACTAAAATAGTAAGCCACATAATATAACATTAGGCTCTGGAATGTCAGAAAATACTTGCACtattaatatacaaataaatctGTCTTTACTGAGCACTGTCCTATAGCAATATTTTACTTAGTAAACTGCTCTGTTTTATTGACAGAAAGTAACATATGCCATGGTAGACAttatgtatataaaatatatctgtgtcaaaacaatacactgccAATCTTCTTATTTattcaaagtttatttatataattaatCAAAGCTCTATTATGTGATATTTCCAATAGCTTTTACCATTTATGTGAAAAGTTTACAATGATTAGAATACAAAATCTTGGATTAATTTAAACCGTCTATCAGGTGATGTTTTGCAATGGTGGGTAAAGAGAAAGTGTATCAGGGAATGTttcatttttaatgtttaatgttcagGAGCTTTAATTAAAATGCACCAGTGATGTTTACGTACAAGTAAGACTGGTTGTGTGAGTTCCTCCAATTACCTACAGTGTCTTACAGTCAGCCGGTctcagcctttgttgtgtcagTGATTCaggtttgttaaaaaaaaaaaaagaattatccATTCACTgcatatttatatgtattttgaGAATAAATCACAGTAATCCTCCCTAATGAATTTATATTCTATGTAATTTGTAATCTATTGTAATTTATCTAACTATACACTGTTGTACCTAATTAATCTCTATCGTCTACATAACTACACAGAATACTGTACTCAACCTGCACTTTGGTATTTAATGCTTCtgttgcacttctggttggatgtCAACTGCATTTCATCATTCATCTGTACCTGTATTCTgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189582 lncRNA downstream 7234 1893409 ~ 1893793 (-) True G140572
TU189555 lncRNA downstream 18222 1875358 ~ 1882805 (-) True G140552
TU189556 lncRNA downstream 18222 1875358 ~ 1882805 (-) False G140552
TU189557 lncRNA downstream 18222 1875358 ~ 1882805 (-) False G140552
TU189568 lncRNA downstream 18572 1834599 ~ 1882455 (-) True G140559
TU189656 lncRNA upstream 1978 1907245 ~ 1908644 (-) True G140601
TU189625 lncRNA upstream 21865 1927132 ~ 2030369 (-) True LOC120573528
TU189640 lncRNA upstream 21865 1927132 ~ 1932596 (-) False LOC120573528
TU189649 lncRNA upstream 22285 1927552 ~ 2030226 (-) False LOC120573528
TU189653 lncRNA upstream 22865 1928132 ~ 2030369 (-) False LOC120573528
XM_039823219.1 mRNA downstream 15340 1883902 ~ 1885687 (-) True LOC120573473
XM_039822828.1 mRNA downstream 126109 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 126135 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 236082 1660137 ~ 1664945 (-) True LOC120573508
XM_039821465.1 mRNA upstream 114345 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 117752 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 548800 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 548800 2454067 ~ 2573483 (-) True camk2d1
XM_039821763.1 mRNA upstream 548800 2454067 ~ 2573483 (-) False camk2d1
TU189195 other downstream 1449357 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1473543 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1482021 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1483946 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1485159 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 146214 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2249657 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2369384 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2369384 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2369384 4274651 ~ 4275274 (-) False G141027

Expression Profile