RNA id: TU189649


Basic Information

Item Value
RNA id TU189649
length 1240
lncRNA type read_through
GC content 0.53
exon number 6
gene id LOC120573528
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1927132 ~ 2032506 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caacaacaaccacagaagaagcaacgacaaccacagctgccctaacaacaaccacagaagcagcaacgacaaccacagctgctccaacaacaaccacagaagcagcaacaacaaccacagctgcagcaacgacaaccacagctgctccaacaacaaccacagaagcagcaacgacaatcacagctgcagcaacgacaaccacagctgccccaacaactaccacagaagcagcaacgacaaccacagctgccccaacaacaaccacagaagcagtaACGACAAGCACatctgcagcaacgacaaccacagctgctttaactacaaccacagaagcagcaacgacaacgacagctgccccaacaacaacaacagaagcagcaacgacaaccacagctgccccaacaacaaccacagaagaagcaacgacaaccacaactgccccaacaacaaccacagaagaagcaacgacaaccacagctgccctaacaacaaccacagaagaagcaacgacaaccacaactgccccaacaacaaccacagaagcagcaacgacaaccacagctgccccaacaacaaccacagaagaagcaacgacaaccacagctgccccaacaacaaccacagaagcagcaacgacaaccacagctgccccaacaacaaccacagaagcagcaacgacaaccacagctgctccaacaacaaccacagaagcagcaaacgagaaccacagctgccccaacaacaaccacagaagcagcaacgacaacaaccgctgccccaacaacaaccacagcagcaacaacaaccacagaagcaatAACGACAAccacagctgccccaacaacaaccacagaagcagtaACGACaagcacagctgcagcaacgacaacgacagctgccccaacaacaaccacagaagcagcaacaacaaccacagctgcagcaacgacaaccacagctactccaacaacaaccacagaagcagcaacgacaaccacagaagcagcaacgacaacgacagctgccccaacaacaacaacagaagcagcaacgacaaccacagctgccccaacaacaaccacagaagcagcaacgacaaccacagctgccccaaccaCAGccacagaagcagcaacgacaaccacagctgccccaacaaccacagctgcagcaacaacaaccacagaagcagcaacgacaaccacagctgccccaacaaccaacagaagcaacaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189656 lncRNA downstream 18908 1907245 ~ 1908644 (-) True G140601
TU189619 lncRNA downstream 22285 1901027 ~ 1905267 (-) True G140597
TU189620 lncRNA downstream 22285 1901027 ~ 1905267 (-) False G140597
TU189582 lncRNA downstream 33759 1893409 ~ 1893793 (-) True G140572
TU189557 lncRNA downstream 44747 1875358 ~ 1882805 (-) False G140552
TU189687 lncRNA upstream 26063 2056289 ~ 2059027 (-) True G140619
XR_005641376.1 lncRNA upstream 52439 2082665 ~ 2085669 (-) True LOC120572143
TU189744 lncRNA upstream 64141 2094367 ~ 2195674 (-) True G140675
TU189755 lncRNA upstream 124143 2154369 ~ 2154765 (-) True G140683
XR_005641448.1 lncRNA upstream 244985 2275211 ~ 2275993 (-) True LOC120572445
XM_039823219.1 mRNA downstream 41865 1883902 ~ 1885687 (-) True LOC120573473
XM_039822828.1 mRNA downstream 152634 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 152660 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 262607 1660137 ~ 1664945 (-) True LOC120573508
XM_039821762.1 mRNA upstream 423841 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 423841 2454067 ~ 2573483 (-) True camk2d1
XM_039821763.1 mRNA upstream 423841 2454067 ~ 2573483 (-) False camk2d1
XM_039821760.1 mRNA upstream 423841 2454067 ~ 2573483 (-) False camk2d1
XM_039821759.1 mRNA upstream 423841 2454067 ~ 2573483 (-) False camk2d1
TU189195 other downstream 1475882 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1500068 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1508546 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1510471 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1511684 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 21255 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2124698 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2244425 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2244425 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2244425 4274651 ~ 4275274 (-) False G141027

Expression Profile