RNA id: TU189656


Basic Information

Item Value
RNA id TU189656
length 242
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G140601
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 1907245 ~ 1908644 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCGCTCCCAAATCACCCACAATCCTATGCGCGCGGCTTTGCCGGctcgttaaaaaaacaacaatggcggacctAAGCGGGGCATCCATGGTTGGATCGGCATCGCTGATGGCACACGTATCATTTAAATgggACTAAGGAACAAACGGAAGCTGCCCTAGCATCACCAGAAGGGAgacatgaggaggagagggaaagcaaaagacaagCATGGAGACAGAGGCCAAAGAGATGTTGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189619 lncRNA downstream 1978 1901027 ~ 1905267 (-) True G140597
TU189620 lncRNA downstream 1978 1901027 ~ 1905267 (-) False G140597
TU189582 lncRNA downstream 13452 1893409 ~ 1893793 (-) True G140572
TU189555 lncRNA downstream 24440 1875358 ~ 1882805 (-) True G140552
TU189556 lncRNA downstream 24440 1875358 ~ 1882805 (-) False G140552
TU189625 lncRNA upstream 18488 1927132 ~ 2030369 (-) True LOC120573528
TU189640 lncRNA upstream 18488 1927132 ~ 1932596 (-) False LOC120573528
TU189649 lncRNA upstream 18908 1927552 ~ 2030226 (-) False LOC120573528
TU189653 lncRNA upstream 19488 1928132 ~ 2030369 (-) False LOC120573528
TU189623 lncRNA upstream 19761 1928405 ~ 1929518 (-) False LOC120573528
XM_039823219.1 mRNA downstream 21558 1883902 ~ 1885687 (-) True LOC120573473
XM_039822828.1 mRNA downstream 132327 1749519 ~ 1774918 (-) False aco1
XM_039822829.1 mRNA downstream 132353 1749519 ~ 1774892 (-) True aco1
XM_039823278.1 mRNA downstream 242300 1660137 ~ 1664945 (-) True LOC120573508
XM_039821465.1 mRNA upstream 110968 2019612 ~ 2022367 (-) True LOC120572242
XM_039823313.1 mRNA upstream 114375 2023019 ~ 2032506 (-) False LOC120573528
XM_039821762.1 mRNA upstream 545423 2454067 ~ 2573483 (-) False camk2d1
XM_039821757.1 mRNA upstream 545423 2454067 ~ 2573483 (-) True camk2d1
XM_039821763.1 mRNA upstream 545423 2454067 ~ 2573483 (-) False camk2d1
TU189195 other downstream 1455575 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 1479761 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 1488239 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 1490164 417010 ~ 417081 (-) True trnam-cau_41
unassigned_transcript_677 other downstream 1491377 415797 ~ 415868 (-) True trnam-cau_40
TU189682 other upstream 142837 2051481 ~ 2058191 (-) True G140615
TU190151 other upstream 2246280 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 2366007 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 2366007 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 2366007 4274651 ~ 4275274 (-) False G141027

Expression Profile