RNA id: TCONS_00006798


Basic Information

Item Value
RNA id TCONS_00006798
length 1976
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_003467
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25256812 ~ 25266235 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatcaaataaaatgaagtcAGAAAGTTTGGTTCAATATTAAATCAATAGGATTTTTCTGaatatttcagtttagtttgtagAAAACTTAAAGGTGCATCAGTTATAAATTATAGAGCATCCAGAGTAAGAATATTTGAAGGTATATTTGAGTTTGTTTCTATTGTGTATTGacaatttgtaattttaattGATGGCAAGAGGCCACAATATAAGTGTTGTAAGATATCAGCTATTTCCCCCCTTCACGTTCATACATTGGTGAAGTTTCAGTGACAAGCAGTGACATTTGCGTTATATTGATCTGAACTCAACTTCAGTAGTGGCATTtatactaaactaaactgaagagGTTATAATTTCTCTAGAACTATATCAGCATACTACACCACTTCATTCTTCattcttcatctatgttaagctgctttgacacaatctacattgtaaaatgtgctagaaataaagatgaattgatcaTCAGAATTATTCGCTGAAACTAATGTGATATATGTGCTATTAATCACAtcgattaaatatttatttaataatactaaAGACAGAAGTTTTGAAATACCAGCTTGCTTCAGTCACTATATTGATCATCATCAGTGCATCTGTATATTTTAATTGACTGGCGACTGAAGCATTGTGCCTTTTTCAGTGCCCTACAAAAGAAAGCAAGTGATTTTTATGGTGAGTTCATGGAACAGCATGAAGGTGGGTTTATTTTTTCAATGATCTCcccctttaaatgtgttttagtgtCCGTGTATCCGTTGCTGAGGAACATTCTGCAGTTTTCAAATTTTGTTAATACTCCCCCTAACTCGCTTTATTCTCAACTGACCTGGAGTCAGCTGTACTCAAAACCGGCCAATGAGTTTTAAAGTACAATGTTACAACTGTTCCTAGGTCTGTAGTAGCTGTAAAACGGTAAGTGCGCCCCGTTTATATAAGTCTCCGCCTTTCGGTTTGTGTTTGAATCTTATTGGACTAGCCAAAATCAGTGGGCGGGTCTACTTCGCTGggctttttgtttttaatatcagCTGTTCGTCGTGATCTAAACTGCGGTGCtgtgtttttttgtgtaataaaagcataaattacaaaaagaaaagaacaaataTTCCGCATCTACCTCGGATTATACAACCAAAGATTAATTTAATGCGAATTAGACCTACAAGgTCAAACTGCTGAGTTCTGCTCTTCATATCTGCCTGAGAGGAGAAGTTTATACCAACCAAGCTCACCATCAATTATTCAGTACAATCACAAGTAAATTATAACCATGTTTCAACGGCTCACGAATCTGCTGTTCGGAAGCGTGAATGAAACAACTCAGGAACCAACTGTACCAAAACCAGCATCCCCAGAAGTGGACGAAGAGGGCTGGCTATTGGTTAACGCAGCTGATGGAGAGTCATCTGAAACCGGCGAGCTGCAGTTCAAGTTAATAGGAAGCCTGTCAAACACTGAGATTTGTGCTGCCAGCTTGGTCAGCGAGGCGAGCATCGCTGAACCAGAAGTCCCAGTAGCCCGAAGCAGTGGTCGAGTCTCTCAGCGACTGGTCTCTCAGGCTGGAGCTCTGGTCAAAGTCACACAGATGGGCAGAATACAGCGGGCGCAGGCTCGTGCCAACCGCCACAGTCTCGGCCGTAACTGCATTCAGCGGCAGAACAACATCCGTCAGCGTCTTCCACAACACTTCTCTCGCAAACACCGCATGGTCCTTCACCAGCCTGGCCGATGCAACTTTAATCATTAAGATGCAACGAGTACGCAAACGAACAACCAACATGCAAGTACCTTGGTTCAAAGTTAAAGCTTGATATGAAATATTTGAACCAATTTATACTTACATCTAgggtataataaataaatcttgtgGCAGCTGACATTATGCCTCCAAAAACTGTTTCTTTTACATACTAGTGTGCTAGACTGTCATGCAGCAATAAAATGAAGCAAAGGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000154109

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008402 lncRNA upstream 61 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008615 lncRNA upstream 61 25257132 ~ 25258997 (+) False XLOC_003467
TCONS_00008613 lncRNA upstream 30863 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00008614 lncRNA upstream 30863 25211656 ~ 25228195 (+) False XLOC_003466
TCONS_00006796 lncRNA upstream 32132 25212540 ~ 25226926 (+) True XLOC_003466
TCONS_00006816 lncRNA downstream 214872 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA downstream 214880 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00006823 lncRNA downstream 281619 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00008616 lncRNA downstream 563135 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 922282 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00006795 mRNA upstream 78728 25157374 ~ 25180330 (+) True XLOC_003465
TCONS_00006794 mRNA upstream 104055 25139495 ~ 25155003 (+) True XLOC_003464
TCONS_00006790 mRNA upstream 118633 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006799 mRNA downstream 10513 25276748 ~ 25291709 (+) False XLOC_003468
TCONS_00006800 mRNA downstream 12537 25278772 ~ 25289177 (+) True XLOC_003468
TCONS_00006801 mRNA downstream 30131 25296366 ~ 25311677 (+) False XLOC_003469
TCONS_00006803 mRNA downstream 37604 25303839 ~ 25310706 (+) True XLOC_003469
TCONS_00006804 mRNA downstream 61964 25328199 ~ 25331325 (+) False XLOC_003470
TCONS_00006788 other upstream 131196 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 218421 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 227812 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 233466 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006781 other upstream 233561 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006802 other downstream 30141 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 211508 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 214872 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 811712 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1338376 26604611 ~ 26614587 (+) False XLOC_003495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU494533 True 3143 TUCP 0.41 4 CI01000306 2973156 ~ 2979157 (+)
rainbow trout (Oncorhynchus mykiss) TU494533 True 257 lncRNA 0.50 1 NC_048569.1 72526893 ~ 72527149 (-)