RNA id: XM_039821758.1


Basic Information

Item Value
RNA id XM_039821758.1
length 3518
RNA type mRNA
GC content 0.46
exon number 20
gene id camk2d1
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2454066 ~ 2573483 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCAAACCCAACAGCAGGTCGCGACTTCCCCTGTCAGCTCCAGAAGGAACCGGGGTCTGCGAACAGGAGCCGGGAGGAGCGACGCCGagctttttacctttttaacgTTACACCTTTCAGGAGTCATTAGGCTATTAAATAATTCCTAcctttgcttttattttctccGCCGAAACGCTACAAGTGGCACTTTGGGACCCAAAGGAGAAAGGATTTTGTGGAGTGTTTTTAAAGCGACTCACTCGGGCGTTCAGTTTGCAAGTTGCTCTCCGCTCACCTTAACATGGCTGCAACGACGTGCACCAGGTTTACCGATGAGTACCAGCTGTACGAGGAGCTGGGCAAGGGGGCTTTCTCTGTGGTGAGACGGTGCCTGAAGATTTCCACAGGGCAGGAGTACGCTGCCAAGATAATCAACACCAAGAAGTTGTCTGCCAGGGATCACCAGAAGTTGGAGAGAGAGGCCAGGATCTGCCGCCTGCTCAAGCATCCCAACATTGTGCGGCTCCATGACAGCATATCAGAGGAAGGATTCCACTATCTGGTCTTTGACTTAGTTACCGGTGGGGAGTTGTTTGAGGACATTGTTGCCAGGGAGTACTACAGCGAAGCTGATGCCAGTCACTGCATACAGCAGATTCTAGAAAGTGTAAATCAATGCCATGTAAATGGCATAGTGCACAGGGACCTTAAGCCAGAGAATTTACTCTTAGCCAGCAAGTTGAAGGGGGCAGCGGTTAAACTGGCAGATTTTGGCCTGGCTATTGAAGTGCAGGGAGAGCAGCAGGCATGGTTCGgttttGCTGGTACACCAGGGTACCTGTCTCCAGAGGTGCTGAGGAAAGATCCATACGGCAAGCCAGTGGACATGTGGGCCTGTGgTGTGATCCTCTACATCCTCCTGGTGGGATATCCTCCGTTCTGGGATGAGGACCAGCACAGACTCTACCAGCAGATTAAAGCTGGGGCTTATGATTTCCCTTCTCCTGAGTGGGACACAGTGACTCCAGAGGCCAAAGACCTGATCAACAAGATGCTGACCATCAATCCAGCCAAGAGAGTGACTGCCACAGATGCACTCAAACACCCCTGGATCTGCCAACGCTCCACTGTGGCGTCCATGATGCACAGACAGGAGACTGTGGAGTGCCTGAAGAAATTCAACGCTAGAAGGAAACTCAAGGGTGCTATCCTGACTACTATGCTGGCCACTCGCAACTTCTCAGCCAAGAGCCTGCTCAACAAAAAAGCGGATGGCATCAAAAAAAGGAAGACGGACGCTATCGGACCTTTGAGGGAGCCTCAAACCACTGTTATCCACAACCCAGCTGATGGAAACAAGGAGTCCAGTGAGAGTGCCAATACCACCATCGAGGACGAGGACGTGAGAGctCGTAAGCAGGAGGTCATTAAAGTCACCGAGCAGCTGATCGAGGCCATCAACAACGGCGACTTTGAAGCCTACACGAAGATCTGTGATCCTGGCCTCACATCCTTCGAGCCGGAGGCCTTGGGCAACTTAGTGGAGGGCACCGACTTCCACCGCTTCTACTTTGAGAATGCTCTGTCCAAGGGGAAGCAGCCCATCCACACCATCCTGCTCAACCCCCACGTCCACCTGATCGGGGACGAGGCCGCCTGCATCGCCTACATCCGCCTCACCCAGTACATCGACAGCAACGGCATGCCTCGCACCATGCAGTCAGAGGAGACCCGCATCTGGCACCGCCGCGACGGCAAGTGGCAGAACATCCACTTCCACCGCTCCGGCTCGCCCACTGTGCCCACCAATTGAGAGGACCATCTTTGACTACAAACACCCTCCAGCCTACAACAGATCCCGCCTACCAAGTGTCCATCAGATCCCTCAGCCAATCCTAGCCCCCGACAGCTAGAGCTCTGCCCCCTCAGTGTGTTGTTTACATAATGTCCCTGTTGGACTGAACATTGTTGtacatgatgaaaaaaaaaatacccataGGGGAAAACTTCAAGTCTTGACAATATGATTTTGTAGTGTGAGTTTGGTGTTGATTCCAGGAGTTTTTTAGATCCGTATGTTTGAAATAGAAGTGGTTTCAGACCACTGGTTGATTCGTTATTAATGGGCTGGTGAAATATGTGGAACTTCCAGTGACAGTTTTTCATTTGAATATTGCACATATTGAGGACTCACAAGCTCTTGTGATGTTTTTTGCCTTTTGGCACGATGACCAATATATCACATATCTGCTTTTTACCCATGTATCCTTTCAGCGTTGCCATCTATTAAAGGCCAGGCACAAGCTTGCTCTTGTTTTGGTGATGTATATGTTTTGGTAATTGATGTAAATCGCTCGCTCTTTGCTTAATCTTTAGCGGTAGCCAAATGAACTGAGTTGGCTAATTTTAAAAATCTGTTTTCTGGTTTGCCACTGGTACCAAGTATGTTTACTTTGAATTTTAACTACATGTTTAAAAGGGAAAATCAATTGAAACATATGTTTTACCATGTCTGTTTGGAGCTCCATCATCAAGAATGTATAGACTATAGACATACATATAATTCTTAAGGGGTATTCTGTGACTTTTCAGTCAAATCATATTTTCATACAGTAAGGAACTAATTATGTGAATTTGATCAGCtattttttgtttacttttgaaATTGTGATGTTGATGCCTGTCCCTCCACTTCTCATTATTAATGCTTTCCAATTTCAACTTTGATTGAGTCCCACCTTGATTCTGTGTATGACTGGTGTACGCCAATGTTTTACACTGGACAACACTAGTCATAATTCTTCCACTTACGAGAAAGCCAAATCCGTTCTGGAAGGAAGTTAGCCATTCATTTTTGTCATGAGGGAatttcagttatttatttttttaaagatatttttgggggcattttaggccttttatttgACAAGACAGCtgtaaggggagagagagagggggaggggggaatgACGTGCATCAAAGGGCCGCAGGTGGGCGTCGAACCCCGGCCCGCTGCGTCAACTAAACCtgtatatatgggcgcccgctctaccaactgagctgtcTGGGCACACGGGAATTTGAGTTTTAGCCAGAATAACTGAGCATTAAATCACCGTTTTAGTTCTGTTATTTGAGTGTCACTGTTAAATGAAAAGGGATTGTTGGCATCACTTATATCTATTTATATCTAATGGTTTATATGTGGAAAACCCTTTCCGTTAGGGTGTTGTGAAATGTAAGCGGGAGGAAACTAATGGGAAAGCACGGGGAAAGGTTTGGGGATATAGTCCCAGGGTGTCCACTGATGCTTACAGTTGGGTTTTACATATTGAGATTTTTGTTTGCTTCTAAAAAACATTCTTTTGTTTAATCACATTTGTCCCTCACTCACCacacttagttttttttttttatctttctaaGATGCATTGACATTCCAGATGGGACACTGGTATGTAATGTGACCATGATGGGACAATCCTGATGTATGTTTTTagtattataataaaatgtgtgatttcTGCCAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189788 lncRNA downstream 9471 2427912 ~ 2444596 (-) False G140710
TU189789 lncRNA downstream 9471 2442768 ~ 2444596 (-) True G140710
TU189768 lncRNA downstream 160232 2293629 ~ 2293835 (-) True G140696
TU189767 lncRNA downstream 174853 2278930 ~ 2279214 (-) True G140695
XR_005641449.1 lncRNA downstream 177633 2276082 ~ 2276434 (-) True LOC120572446
TU189801 lncRNA upstream 24351 2597834 ~ 2599233 (-) False arsj
TU189826 lncRNA upstream 100040 2673523 ~ 2676919 (-) True G140747
TU189828 lncRNA upstream 115271 2688754 ~ 2690247 (-) True G140749
TU189829 lncRNA upstream 116834 2690317 ~ 2691045 (-) True G140750
TU189832 lncRNA upstream 155798 2729281 ~ 2729619 (-) True G140753
XM_039823313.1 mRNA downstream 421561 2023019 ~ 2032506 (-) False LOC120573528
XM_039821465.1 mRNA downstream 431700 2019612 ~ 2022367 (-) True LOC120572242
XM_039823219.1 mRNA downstream 568380 1883902 ~ 1885687 (-) True LOC120573473
XM_039822828.1 mRNA downstream 679149 1749519 ~ 1774918 (-) False aco1
XM_039821280.1 mRNA upstream 24863 2598346 ~ 2622100 (-) True arsj
XM_039822910.1 mRNA upstream 105462 2678945 ~ 2797531 (-) False pde5ab
XM_039822909.1 mRNA upstream 105462 2678945 ~ 2769605 (-) False pde5ab
XM_039822908.1 mRNA upstream 105462 2678945 ~ 2769604 (-) True pde5ab
XM_039822857.1 mRNA upstream 239072 2812555 ~ 2818659 (-) True si:dkey-219e21.4
TU189682 other downstream 395876 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 2002397 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 2026583 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 2035061 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 2036986 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 1581441 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 1701168 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 1701168 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 1701168 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 1701168 4274651 ~ 4275274 (-) False G141027

Expression Profile