RNA id: TU189844


Basic Information

Item Value
RNA id TU189844
length 1256
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G140761
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2822870 ~ 2824231 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCAACATCCTCCTGATGAACTTGAAAGTTCATTCATAACCGTAGAAAATACTGAACTCAAGGTTAAGTATTTTCTACATTTGTGCTGGATGTGTCAACGGGCAATAGCTTGTTCTTCTGGCCAAAGATCAATTAATGCAGATTGAATGCCCTCGTCCAAATACGCATACTACAAGTTAACAGGTGGAAGGGTTGGTATTTAGGGCAAAAATAAGATAActgttattttaatttattcattaaaAATGCTGCCATATACCAACTTTGGGTGTCTATGCATGTCAATGAAAATACAAGGCAAACtctcttttgttacttttttctacTACAACAACTGCTGACACTGTTGAACAGTCCTTTGAGTTTAAATAAAAGAAGTTATTGCACAGCTGACAGATACTGCATCAATGCTGAGGTCACTTGGACAGAGCGGCCATCTTCTTTGCTCTGCGAGCGCCTCCAGACATCCTCTTAGCTTTAGGCTTCACCAGGGGATGACGGGATACATTTTTGCCTCCACTCTTGGCTTTGGAGCGATTGCTGATCCTGTGCGAGTCTTTGAGAGGGCAGGCTTTGCGTTTGTGCTCCCGGCTGCCACAGCTGAAGCACCCGTCCTCTGACTGGCCCAGTCCACAGGGGTGGGCTGGGAGGGCACAGCGGCCGCACGCCTGGCAGTGCTTCCACGCTTAGAGGGAAACATTTCATAAATAAGGCTGAGTAAGGCAAAGTAGTTGAGTGAAGTAGGGATCGACCAATTATCAACCTGGCCCATtatctgacctttttttttggtAGTTTGCAGATAATCTCtatctgtattttcatttaccgataaccaataaagttaattaattaaaaagtgtgcTACTTCGGCTCTGTAAGCAGTCTGCAACACCTGCAGACAAACCGTTAGCATTCAAAaagctatttttgtttttggtttgttcGACTGTGTATTAAAAGGTGacatattattaaatatatataattaaagagacaggcgctcctacAATGTCtcataaataatttattttaacattaaagcatgtaaacatgttctagtacaaacacaaaaggcaagtataatcctgaaaatgctatataatagttgccctttaatatcggttatcggtttcattaactactaataaccTGTAGCAGTATTGGCCCTGAAAAAACAGTAATGGTCGACCCCTAATGTGAAGACTCTGTATGTATTGGAGGGGATTACGTATACTTTACGTACATGGTTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189832 lncRNA downstream 93251 2729281 ~ 2729619 (-) True G140753
TU189829 lncRNA downstream 131825 2690317 ~ 2691045 (-) True G140750
TU189828 lncRNA downstream 132623 2688754 ~ 2690247 (-) True G140749
TU189826 lncRNA downstream 145951 2673523 ~ 2676919 (-) True G140747
TU189801 lncRNA downstream 223637 2597834 ~ 2599233 (-) False arsj
TU189845 lncRNA upstream 82 2824313 ~ 2824618 (-) True G140762
XR_005641447.1 lncRNA upstream 84399 2908630 ~ 2910625 (-) True LOC120572441
TU189918 lncRNA upstream 314949 3139180 ~ 3140180 (-) False LOC120573530
TU189966 lncRNA upstream 328668 3152899 ~ 3153336 (-) True G140842
TU189980 lncRNA upstream 456182 3280413 ~ 3433666 (-) True G140855
XM_039822857.1 mRNA downstream 4211 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039822910.1 mRNA downstream 25339 2678945 ~ 2797531 (-) False pde5ab
XM_039822909.1 mRNA downstream 53265 2678945 ~ 2769605 (-) False pde5ab
XM_039822908.1 mRNA downstream 53266 2678945 ~ 2769604 (-) True pde5ab
XM_039821280.1 mRNA downstream 200770 2598346 ~ 2622100 (-) True arsj
XM_039823055.1 mRNA upstream 293003 3117234 ~ 3128616 (-) True c14h4orf54
XM_039823321.1 mRNA upstream 314890 3139121 ~ 3143189 (-) True LOC120573530
XM_039823056.1 mRNA upstream 342637 3166868 ~ 3252975 (-) True focad
XM_039823625.1 mRNA upstream 631289 3455520 ~ 3457848 (-) True LOC120573709
XM_039822508.1 mRNA upstream 979755 3803986 ~ 4118384 (-) True adam19a
TU189682 other downstream 764679 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 2371200 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 2395386 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 2403864 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 2405789 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 1330693 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 1450420 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 1450420 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 1450420 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 1450420 4274651 ~ 4275274 (-) False G141027

Expression Profile