RNA id: TU190002


Basic Information

Item Value
RNA id TU190002
length 275
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G140875
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3435918 ~ 3436192 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagatttctcgttaatgcaattatctaatcatggcagctgcttcaatgcatttaggggtgtcgtccaggtctagacaatctcctgaactccaaactgaatgtcagaatgggaaagaaaggtgatctaagcaactttgagcgtggcatggttgttggtgccagatgggctggtttgagtatttcacaatctgctaaATTGCTgagattttcacgcacaaccatttctagggtttacaaagaatggtctgaaaaaggaaaaacatccagtatgcggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190001 lncRNA downstream 558 3435060 ~ 3435360 (-) True G140874
TU189980 lncRNA downstream 2252 3280413 ~ 3433666 (-) True G140855
TU189982 lncRNA downstream 2252 3419260 ~ 3433666 (-) False G140855
XR_005641695.1 lncRNA downstream 114861 3319025 ~ 3321057 (-) True LOC120573362
TU189989 lncRNA downstream 115199 3319318 ~ 3320719 (-) False LOC120573362
TU190004 lncRNA upstream 1193 3437385 ~ 3437606 (-) True G140877
TU190005 lncRNA upstream 1927 3438119 ~ 3438497 (-) True G140878
TU190009 lncRNA upstream 18823 3455015 ~ 3455366 (-) True G140882
TU190020 lncRNA upstream 43823 3480015 ~ 3480343 (-) True G140892
TU190045 lncRNA upstream 86937 3523129 ~ 3579352 (-) True G140910
XM_039823056.1 mRNA downstream 182943 3166868 ~ 3252975 (-) True focad
XM_039823321.1 mRNA downstream 292729 3139121 ~ 3143189 (-) True LOC120573530
XM_039823055.1 mRNA downstream 307302 3117234 ~ 3128616 (-) True c14h4orf54
XM_039822857.1 mRNA downstream 617259 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039822908.1 mRNA downstream 666314 2678945 ~ 2769604 (-) True pde5ab
XM_039823625.1 mRNA upstream 19328 3455520 ~ 3457848 (-) True LOC120573709
XM_039822508.1 mRNA upstream 367794 3803986 ~ 4118384 (-) True adam19a
XM_039821295.1 mRNA upstream 820443 4256635 ~ 4259813 (-) True ing2
XM_039823282.1 mRNA upstream 866453 4302645 ~ 4312866 (-) True slx1b
XM_039823323.1 mRNA upstream 885572 4321764 ~ 4331757 (-) True LOC120573533
TU189682 other downstream 1377727 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 2984248 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 3008434 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 3016912 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 3018837 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 718732 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 838459 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 838459 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 838459 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 838459 4274651 ~ 4275274 (-) False G141027

Expression Profile