RNA id: TU190020


Basic Information

Item Value
RNA id TU190020
length 283
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G140892
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3480015 ~ 3480343 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaacaagattttggatcattattggtgcgaaacaggtgaaagtgcttgaaatgtgacaatttggtagcttgtatggtaactgtgtgggaatagcaggtgcagaaagacaacattcccacacagacacatacaatcagacacgaccacataaagacgcacagacacagacacagacagacagacagacagacagacacacatcaaacaaacaacgcatttcccggggagaggcaggggagagcagcggaggaaaagtgCATTccctccgctgcacggtgtcGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190009 lncRNA downstream 24649 3455015 ~ 3455366 (-) True G140882
TU190005 lncRNA downstream 41518 3438119 ~ 3438497 (-) True G140878
TU190004 lncRNA downstream 42409 3437385 ~ 3437606 (-) True G140877
TU190002 lncRNA downstream 43823 3435918 ~ 3436192 (-) True G140875
TU190001 lncRNA downstream 44655 3435060 ~ 3435360 (-) True G140874
TU190045 lncRNA upstream 42786 3523129 ~ 3579352 (-) True G140910
TU190054 lncRNA upstream 102369 3582712 ~ 3586257 (-) True G140917
TU190053 lncRNA upstream 103414 3583757 ~ 3586257 (-) False G140917
TU190063 lncRNA upstream 193748 3674091 ~ 3674463 (-) True G140926
TU190144 lncRNA upstream 583853 4064196 ~ 4064740 (-) True G140997
XM_039823625.1 mRNA downstream 22167 3455520 ~ 3457848 (-) True LOC120573709
XM_039823056.1 mRNA downstream 227040 3166868 ~ 3252975 (-) True focad
XM_039823321.1 mRNA downstream 336826 3139121 ~ 3143189 (-) True LOC120573530
XM_039823055.1 mRNA downstream 351399 3117234 ~ 3128616 (-) True c14h4orf54
XM_039822857.1 mRNA downstream 661356 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039822508.1 mRNA upstream 323643 3803986 ~ 4118384 (-) True adam19a
XM_039821295.1 mRNA upstream 776292 4256635 ~ 4259813 (-) True ing2
XM_039823282.1 mRNA upstream 822302 4302645 ~ 4312866 (-) True slx1b
XM_039823323.1 mRNA upstream 841421 4321764 ~ 4331757 (-) True LOC120573533
XM_039822737.1 mRNA upstream 851920 4332263 ~ 4351683 (-) True pygmb
TU189682 other downstream 1421824 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 3028345 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 3052531 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 3061009 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 3062934 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 674581 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 794308 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 794308 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 794308 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 794308 4274651 ~ 4275274 (-) False G141027

Expression Profile