RNA id: TU190054


Basic Information

Item Value
RNA id TU190054
length 413
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G140917
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3582712 ~ 3586257 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaatgctgaatagctgaattgctaaagctaaactgattgaatagcttaaatccgtaagaagaagttgaagtagtgaaaatagttaaaaaagcggaaatcgttttaataagtatgaatttcattaaaaagttcaaagtttatgctaaactgaactgtttgctttgaaggttgaataatgacaagatatgtagaacattgtgaggtctgagtagattttctaactgataatgactcacatatgcagaaatatgaagcaaattaatactgtaatactgttaaagatgaaagttgaaaaggctgaaagaagaaatatttttattattatcagatatatacactgcatagaacgaaaaagcatcaatctagctgagatgagatgtgaaatatattaggtgaaaagaatgggtctgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190045 lncRNA downstream 3360 3523129 ~ 3579352 (-) True G140910
TU190020 lncRNA downstream 102369 3480015 ~ 3480343 (-) True G140892
TU190009 lncRNA downstream 127346 3455015 ~ 3455366 (-) True G140882
TU190005 lncRNA downstream 144215 3438119 ~ 3438497 (-) True G140878
TU190004 lncRNA downstream 145106 3437385 ~ 3437606 (-) True G140877
TU190063 lncRNA upstream 87834 3674091 ~ 3674463 (-) True G140926
TU190144 lncRNA upstream 477939 4064196 ~ 4064740 (-) True G140997
TU190146 lncRNA upstream 622910 4209167 ~ 4210770 (-) True G140999
TU190190 lncRNA upstream 688394 4274651 ~ 4275274 (-) False G141027
TU190194 lncRNA upstream 688394 4274651 ~ 4275274 (-) False G141027
XM_039823625.1 mRNA downstream 124864 3455520 ~ 3457848 (-) True LOC120573709
XM_039823056.1 mRNA downstream 329737 3166868 ~ 3252975 (-) True focad
XM_039823321.1 mRNA downstream 439523 3139121 ~ 3143189 (-) True LOC120573530
XM_039823055.1 mRNA downstream 454096 3117234 ~ 3128616 (-) True c14h4orf54
XM_039822857.1 mRNA downstream 764053 2812555 ~ 2818659 (-) True si:dkey-219e21.4
XM_039822508.1 mRNA upstream 217729 3803986 ~ 4118384 (-) True adam19a
XM_039821295.1 mRNA upstream 670378 4256635 ~ 4259813 (-) True ing2
XM_039823282.1 mRNA upstream 716388 4302645 ~ 4312866 (-) True slx1b
XM_039823323.1 mRNA upstream 735507 4321764 ~ 4331757 (-) True LOC120573533
XM_039822737.1 mRNA upstream 746006 4332263 ~ 4351683 (-) True pygmb
TU189682 other downstream 1524521 2051481 ~ 2058191 (-) True G140615
TU189195 other downstream 3131042 443550 ~ 451670 (-) True G140274
unassigned_transcript_680 other downstream 3155228 427403 ~ 427484 (-) True trnal-aag_5
unassigned_transcript_679 other downstream 3163706 418935 ~ 419006 (-) True trnam-cau_42
unassigned_transcript_678 other downstream 3165631 417010 ~ 417081 (-) True trnam-cau_41
TU190151 other upstream 568667 4154924 ~ 4155547 (-) True G141003
TU190189 other upstream 688394 4274651 ~ 4275274 (-) True G141027
TU190191 other upstream 688394 4274651 ~ 4275274 (-) False G141027
TU190193 other upstream 688394 4274651 ~ 4275274 (-) False G141027
TU190197 other upstream 688394 4274651 ~ 4275274 (-) False G141027

Expression Profile