RNA id: TCONS_00006799


Basic Information

Item Value
RNA id TCONS_00006799
length 2517
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_003468
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25276748 ~ 25291709 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGATCTCCCGGCCGCTCTGTGTTCATCAAACACTCTCCATTCAACATGGAGCTCAACGAGCAGCGGTACTTCATCGTCCTGAGGAGAAACAAGAAAGGCCTGTCCCGCGGGACTATCGGGCGAGCAGAAGGGGAGACAGCAGAAGAAGAGCTGATTGGGATGGTTTGTGAAGGAGGAGGTAGCATCAGGAGCAGCAGGACGGTAAAGAAACACGACACTTACCCGCTGTCGAGGCACCAGGCTGGACTGCTGATGTTGGTGTGTCCCGCTAGCAGGAGGCTGGAGCTGCTGGGAAACCTCCAGCTGTTCTCCGCCATCTGTGAGCTGGCGCGGGATGATCTGGTGATGGTCAAACATAAGAAGATCTTTCAGCCGTGCTTGGTCAAGAATCTGGTTCAAATAGGCAAACAAGACAAACAGGGAGACTTGCAGGTGCTGGGCTTCGAGCTGGAGCTGGTGGAGACTGAGAATGAAATTTCTTTGAAGAAGACAGCTCCTCTGCCCTTTTTCAGTGCAGCTGATATTCTGCAAGTGGCTCCTTCTGATTTAAACACCAGGGTACCACTGAGAGATGCCATTGATTTAGGTTTGAAGAGGAAAGCAGTGTCCCTTCTCAATTCCTTGCCATCACTAAACTCACGCAATGCTAAAAAAGGAAGTGTCCTCTTCAAAAAGGATGTGTCCGAATCTATTCAGGCCTTGTCCCATTATTCTCTGGAGGTGGGTTCCATGGCAGAGGTTCTGTCTTTGAATGGACTGACCGTGTATGGGGTGATCAGATGGATTGGGGTTCCAGAAGGAAAGAAAAACTGCTGGGCAGGACTTGAACTGGACACAGAGGCGACGACTTGTTCAGATGGGACGTTGGGAACAAAGCGATATTTTACCTGTGAGGCAAATAAAGCCTTGtttgtgccattgaccaactgcAAACCAGACAGTAGATTTCTGTTAATTCCGGATGAGATGCTGAAACCACTCAACCCTCCTTCAGCCACACTTGTGGAGGATTTGGATGAAGACGTTCCACCTGTAGCTGAGCAAGATGTTTTGTCTCATCTGGTTGGCAGAATGAAGGGGATCCAAGGTCACTTCAACTCCTGCTATCTAGATGCCACTCTCTTTAGTCTCTTTACGTCATCCGTAGCTTTTGACAGAATTTTTAACAGATCAGCAGATAGCAAGAAAGGCATTTCTCACATTTTAAGACGGGACATCGTGAACTGTTTACGCAGATCAGGCTTTGTTCCAGCAGAGAATGTGATGAAGTTTCGTGAACAACTGGGCTGCAAATCTTTTGCTTCAGAAGAAAAAGATCCAGAGGAGTTCATCACTTTACTGctacagcatgttttacacatagAGCCTTTGCTCAAAATCAGgtCACAAGGAGAGTTTCCACAGGAAGCTTATACGCATCAGATCATTGTAGAGAAGAATCAGGTCGCAGCCGTGCCTTCAGTTCAACAGCTGCTTGAGATGTCTTTTGTAACAAGCAATCTAAAGTTTGAAGAGATTCCATCCTGCCTCATAGTTCAGATGCCACGTTTTGGAAAGAAGTTCAAGATGTTCCCTAAAATCATTCCCTCAACAGAGCTGGACATCACAGACGTATTGCATTGCTCTCCTCGGGAGTGTTTTCTGTGTGGTCATCTGGCTAAATATGAATGTGTGCAATGCCTGATGGACCGCAAGCTTCAGCCAGGCAAAATTAAGCAGTATTGCTCCACCTGCAACACACAGGTTCACAATCATCCCACCCGACAGGAACACACTCCTCAGAAACTCACACTTCCAGATTGTCCTGCAGAAGATGCACCTGTTCAAAGGCACCCGATGCAGCTCTTTGCAGTTCTGTGTATAAACACCAGCCATTATGTGTCTTTTGTCAAATACGGGCCTGATCCTCGATCCTGGATCTTTTTTGACAGCATGGCTGATCGATGCGGTGATGACAACAAGGGCTACAGCATTCCTGTGATCAGGTCTTGTCCTGAGGTTGGAGATTTTCTGTCGCAGTCTGAAGAGGAGATCAGCTCAGCCGATCTGAGTCAGTGCAGTGAGGCGGTGCGCCGACTGATGGTTGATTCATACATGTGTCTTTATCAGACAACAGACTGTCaacaataatcacacacacacacacttacacacacacacacacatttctgatGCCCATACTGTAACTCTTATGTCATTACATCATGAGGGCTGACACAAATGAAGGACTGCTCAGACACTCTGTTCTTATGATTTCTGATGGAAGTTTATGTCTGCTTGAAAGTGCCCTGATTTATACGGACATTAGGATCATAGGACGTTAGGGCATTTGATCAAGGACAAGTATGAGTTTGCACACAAGCAACATTTTCTCTATTTTGATATGAGAAACGTTCTAGTATATCATGTAAGGTTTTTGTaggattttttttgtcatttttattagattatttattttgtacattatcgtctattcaaattatatatattatattttattaaagttaaatCATCAT

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100208-1 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be located in microtubule organizing center and perinuclear region of cytoplasm. Human ortholog(s) of this gene implicated in Brooke-Spiegler syndrome. Orthologous to human CYLD (CYLD lysine 63 deubiquitinase).

Ensembl:

ensembl_id ENSDART00000126211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008402 lncRNA upstream 17751 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008615 lncRNA upstream 17751 25257132 ~ 25258997 (+) False XLOC_003467
TCONS_00008613 lncRNA upstream 48553 25182092 ~ 25228195 (+) False XLOC_003466
TCONS_00006816 lncRNA downstream 189398 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA downstream 189406 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00006823 lncRNA downstream 256145 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00008616 lncRNA downstream 537661 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 896808 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00006798 mRNA upstream 10513 25259058 ~ 25266235 (+) True XLOC_003467
TCONS_00006797 mRNA upstream 10724 25257022 ~ 25266024 (+) False XLOC_003467
TCONS_00006795 mRNA upstream 96418 25157374 ~ 25180330 (+) True XLOC_003465
TCONS_00006794 mRNA upstream 121745 25139495 ~ 25155003 (+) True XLOC_003464
TCONS_00006790 mRNA upstream 136323 25111846 ~ 25140425 (+) False XLOC_003464
TCONS_00006801 mRNA downstream 4657 25296366 ~ 25311677 (+) False XLOC_003469
TCONS_00006803 mRNA downstream 12130 25303839 ~ 25310706 (+) True XLOC_003469
TCONS_00006804 mRNA downstream 36490 25328199 ~ 25331325 (+) False XLOC_003470
TCONS_00006805 mRNA downstream 36493 25328202 ~ 25336921 (+) True XLOC_003470
TCONS_00006806 mRNA downstream 97038 25388747 ~ 25397129 (+) False XLOC_003471
TCONS_00006788 other upstream 148886 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 236111 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006784 other upstream 245502 25010538 ~ 25031246 (+) False XLOC_003461
TCONS_00006782 other upstream 251156 25009643 ~ 25025592 (+) False XLOC_003461
TCONS_00006781 other upstream 251251 24994733 ~ 25025497 (+) False XLOC_003461
TCONS_00006802 other downstream 4667 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006814 other downstream 186034 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006817 other downstream 189398 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006838 other downstream 786238 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 1312902 26604611 ~ 26614587 (+) False XLOC_003495

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_02983064_02988454.mRNA True 2409 mRNA 0.45 13 CI01000306 2982873 ~ 2988581 (+)