RNA id: XM_039821485.1


Basic Information

Item Value
RNA id XM_039821485.1
length 2237
RNA type mRNA
GC content 0.57
exon number 7
gene id peli3
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4773628 ~ 4829162 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagacgtagGCGTGACATCGGGCTGTCTGCTGTTATATCCGGCAGGAATGAACGTGTCTCAGTCTCCGGTGTAACATGAACGGAGGAGAGGCGATGCTACCGCCGCCGATGCCCTGcgcttcttctctttcttcttctttttcgtCTTCACTCCCGTTCTCCGTCTCTACGCTTCCCAGGCCGTACGGGGACTGACACAAaccgcacacaacacacacacacacgcacacacacacacatacacacaaacacatacacacccagaGGAGGAATTACGCACAGATCCGAGCCGGTCCCGGTCCTCCATTGGCAAACATCAGCGGGTACGGGCCTGTTTATCTGATTTCTCCCATCACCTGTCTTTATTACAGCAgccccatccatccatccatccatccatccacacaGGCGCAGATGACAGGAGACGCCAGCTGGCCTGTTGTCCGCTTTACTGCTCTTCTAGGGAAATGATGGAGGTTAAAGTCCCCGTTTTAATTGTGGATTGTTGACTTTCTCGCCTTTGTTCAAGCTGACGCGAATCTTTATGAGTGAGCCCCAGTTGTGGCCGGTGGGCATGGTTTTGGAGGGTAGCTCAGAGGCGCTGTGTCCCCCCCCATCTCTGGAGCTGCGTCCATCCTGCAACAAGAGCCAGCCCTCGCCTCCTCTGGGCTCAAGCTCGCAACCCCACGACGGAGTCTTCCCTGAGGACAAGGAGCCCGTCAAGTACGGCGAGCTCATCGTCTTAGGGCACAATGGGTCACTGGCCAATGGGGACAAGGGTCGCAGAAGAAGTCGCCTGGCCCTCTATAAGAGACCTAAAGCCAACGGGGTCAAACCTGATGTTATTCACAATGTCTCAACCCCTCTGGTGTCAAAGGCACTCAGCAACAAAAGCCAGCACAGCATCTCCTACACACTGTCACGGAGCCACTCTGTCATTGTGGAGTACACGCATGACACCAACACAGACATGTTTCAGATTGGCCGGTCCACAGAGAGCATGATCGACTTTGTGGTGACTGACACGGCGGGCAGCAGCAGCGGCCAGGGCGGGGGTGCGGCAGGGGAGGGTGGCGGCGGAGGCCAGTCGGCCCAGAGCACCATCTCCCGCTACGCCTGCCGCATCATGTGTGAACGCAGCGCTCCCTACACGGCCCGCATCTACGCCGCCGGCTTCGACTCCTCCAAGAACATCTTCCTGGGGGAGCGGGCCGCCAAATGGAGGACGTCAGATGGCTTAATGGACGGCCTGACCACCAACGGGGTGCTGGTGATGCACCCGGCGGGGGAGTTTGTGTCTGAGCCGGCTCCGGGCGTCTGGAGGGAAATCTCAGTTTGTGGAAACGTCTTTGCCCTGAGGGAGACTCGCTCAGCCCAACAGAGGGGAAAACTGGTTGAAAATGAGTCAAACACCCTCCAGGACGGTTCTCTGATTGATCTTTGTGGGGCTACTCTGCTGTGGAGGACCCCTGCCGGACTgcgccacacccccaccctcaaaCAGCTGGAGTCCCTTCGCCAGGAGCTGAACGCCGCCCGGCCCCAGTGTCCTGTGGGCTTCAACACACTGGCCTTCCCTAGTCTGGCCCAGCGCGAGATCGTTGACAAGAAGCAGCCCTGGGTCTACGTAAACTGCGGCCACGTACACGGCTACCACAATTGGGGCTACCGCAAGGAGAAGGGTCCAGCCGGCCCCGGGGGCACGGCACCAGCCAGCACCGGGGAGAGGGAGTGCCCCATGTGCCGGCGAGTGGGCCCCTACGTGCCGCTGTGGCTGGGCTGTGAGGGGGGATTGTACCTGGATGCCGGGCCGCCCACTCACGCTTTCTGCCCCTGCGGCCATGTATGCTCAGAAAAGACTGTGGTGGGGTGGAGCCAGATCCCGTTACCCCACGGCACCCATGCCTTCCATGCTGCCTGCCCCTTCTGTGGAACCTGGTTGACAGGGGAGCAGGGCCACATCAAACTCATCTTCCAGGGCCCCGTCGATTGAAGCCCAGACCTTGGAGCCCCATGTGATGGTGGATTGGGCAGAGGTGGacgtgctgaaaaaaaaaaaaaaaaaaaaaaaagactgtgtGCTGGAACAAAAATCTGAACACTCAAGTGTGGGATGACAGAGAAAGCACTGATGAGTACAGGAAAAGGACCGTTGACATGATGAACTGAAAGTGCCATGCCTTCACATGGAATATGAGGTGTAAGGAGAATATGTAAATAAATTGTGTTGAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190453 lncRNA downstream 21001 4770972 ~ 4772477 (-) True G141202
TU190441 lncRNA downstream 62479 4728098 ~ 4730999 (-) True G141193
TU190376 lncRNA downstream 137146 4654164 ~ 4656332 (-) True G141155
TU190340 lncRNA downstream 267284 4514007 ~ 4526194 (-) True G141123
TU190332 lncRNA downstream 303974 4489300 ~ 4489504 (-) True G141117
TU190458 lncRNA upstream 5288 4834450 ~ 4834895 (-) True G141207
TU190456 lncRNA upstream 23296 4852458 ~ 4853807 (-) True G141205
TU190463 lncRNA upstream 106120 4935282 ~ 4935501 (-) True G141212
TU190465 lncRNA upstream 114887 4944049 ~ 4947979 (-) True G141214
TU190466 lncRNA upstream 116257 4945419 ~ 4947979 (-) False G141214
XM_039823547.1 mRNA downstream 265466 4518376 ~ 4528012 (-) True ecsit
XM_039823549.1 mRNA downstream 265474 4518376 ~ 4528004 (-) False ecsit
XM_039823548.1 mRNA downstream 265484 4518376 ~ 4527994 (-) False ecsit
XM_039822102.1 mRNA downstream 295271 4486570 ~ 4498207 (-) True si:dkey-106g10.7
XM_039822103.1 mRNA downstream 295272 4486570 ~ 4498206 (-) False si:dkey-106g10.7
XM_039823408.1 mRNA upstream 208956 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA upstream 208956 5038118 ~ 5084391 (-) True sstr1b
XM_039822976.1 mRNA upstream 285832 5114994 ~ 5119327 (-) True znf16l
XM_039822974.1 mRNA upstream 383976 5213138 ~ 5244957 (-) True LOC120573313
XM_039822981.1 mRNA upstream 490635 5319797 ~ 5335717 (-) False LOC120573316
TU190366 other downstream 129280 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 132367 4660621 ~ 4661111 (-) True G141159
TU190189 other downstream 518204 4274651 ~ 4275274 (-) True G141027
TU190477 other upstream 129517 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 270543 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 767796 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 914397 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 914397 5743559 ~ 5843146 (-) False G141439

Expression Profile