RNA id: TU190466


Basic Information

Item Value
RNA id TU190466
length 2561
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G141214
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4944049 ~ 4947979 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATGTTCCTTATATTTCACAgtctattaaaaaaataaagacaaatttgGAATGGCACTTGGTTTTCCCAAATTTTAAAGAGTCAGTTATCCATTAAATTAAAGATGTTTTAACTTGTAAGTGCCTTGCATTCATTAATCGTTTTTTCTTTGGTCTGTAAAATTCTCAACATCCAATGAGCACTTCTCCAAAGAAATCCACGTAGCTTTCTTTCCATATGTTATTTACAATTTTAGATTCTGCAGTCTTTGGGATATGTCGTCTTTTTTGAATTGTAAAATATCTGAAGTTGCATGCATGCAAGGTGTCACACTGACCTGCAGCCTCACACAGCTGGATGATATCCAACGGCCATAAAACCTTGGGCTGTACTAATGGATTAGGGTTATGAAGGGTGACTGATGGCCATATCATGACCAAGGCCAAAGCTAATGTCAATCACCAGCCCCTACAACATTCCCTCCGTAGTGTGAACATCTGCACTTTAACCTCTTTTCAGAAAAAGACAAGGAAAGGAGAAGTGCTCTAAAACTGGACTGAGTAGGGAAAAGCATTCCCATGTGCAGACAGACATTCCTCTGCATATCACCAGGTTTATGGGGTCCATAAAAAGGTATGTCTTTGAAATATtacaattgttacatttcattgGTGACAAGTATGaaacaaacataaatacaaaagaaccactatatacaaataaaggttTGGTCTCTTATCAAACATTCAACAGTGATTTCAAATGACTGCTTTCCCAGCATTATAATGTGACTGTAGAATGTCTTTTCTCTGAAGGGGTATTTGCTTACAGTCTTCTTTCACTCACTGCTGATGTGAGCTAACAATGCACATAAATCCCATTAACATAGTTGACAGTAAGTTATCTACAGTGATATGCTATTGATGAAAACTGAGCCTGAGGATTTAGCATGGAAAGGAGATCATAGCAAAGTTCGCTTTACGATGCTTTTGCCAACAGTACATTGATTTCCAAGGCTCTTTGCAGGATCTGGCTCCAGCtgtgaaatgtgaaatgaataaatgactacacacatttttgacatttctaatgaagacactaatattttataataatgtaaCCTAGATGAAGCAATCAGATCTTGCGCTGTGTGGTCAGTGTATGAAACATCAAAGCAGTTTGTACCACATACTAACCCTATCCCAAAAAAAGGTCAGTGGTTTTAAGTGTCCCTTCCCCACATTATCAATTGCTATTTAACAGTAATATCCAAATGTGTTCAAAGAGTGGGCAGTTCCACAGTCAGAGAGGGTAAAACATTTAGCTTGTCCCTTACCAGGTCCATTATTCACTCCTGCTTACCTCTGAAGCAGAGTCTGTTTAATGTTCTCTCTTCTCTGTTTAAACATGGGTCTTGACCCCTGCTGAGGGGTTTGGAGCTCCCTGTTTATCATGAGCCCCAGAGATCCAGTGGTAGCAGTCAGTGGCATTCTTGTTGCGTGAATGAACAGCACAGCGGGTGCAGTAGACGATGCCCAGCGCCACCATTACTACAACAAAGATGCATATGGGCACTAGGATGCCCACCAGGAGCCAGATGCTGCTCTGCTTCTGCCCCCTGTCTTTCTGGACAGAATCTAGGATGTCATCGGTCTCTAAGCCCTCGCCCAGGGGTGGCTGGTAAGGAGTAAGCTGGGTGGGAACCGTTGGGTCTTGGTGTGTGATCGCCACATAGTCCTTTTGCTCCTCCCCTAACTCCTCCTCTGGGAGCTGATAGTTTACCCTAAGGTAATCCGTAGGCATGTTGGGGTCTGTGGCTAAATCCTCTGGATTTCCTGGTTTCTGGCTGGAAGTGATAAACCCCGCCCACCAATTCCAAGCTCCCTCAGAGATTGTAGAAGTGGAACGGAAATGGAGAGCTGTGGTGGTCTCCTCCTCATTATCGTCATCCTCTTCATACCAGTCTTGGGTAGTGCTGGAGCTGGTGGTGGGTGGAGGTGTGGTGTAGATGGTGGTTGGCAAAGCTTCCAGCTCAGACTCAGATCTCTGCCCCCACCCCCCGTCAGCTCCTTCATTGGCTATGTCTTCCCCATCTTCCTCAGCCTGCTGTGTCGGATGGACCAGTGGTAAATCAAAGCGGTGTTCCTCCTGAGGGGCACTGGTGACCCAAATTACATCAGAATCCAAAACTCTGGGTCGGTCAGTCAGCGTGTCCGGAGATTGCTCATCCTCTGGAGGCCAGTCAGTGTGGCTCTGCTGCTGGTTCCATTCGTAGTCTGCAGGGTGCCATACAGGTCCAGGAAAAGGAGGGGTCACAGCAGATTGGTCATCACTATCCCCTCTCTTGCGACATGAATAGTGATCAGACATGAGTTCATAGCCTTCCTCGCAGTAGCACTCAAATCCACCCTcataattcacacacatctgctCGCAGGTTCCGGGGATCTGGCACTCGTCTGTGTCTTGGCATCGGCTAGGGTCCTCAGGCACTGGGGAAAAACCCAGATGGCAGTGGCAAATATGAGAGCCTTGAGTGTTCTCACAGGCATGTTCACATGGGTCATTTATACACTCATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190463 lncRNA downstream 9918 4935282 ~ 4935501 (-) True G141212
TU190456 lncRNA downstream 91612 4852458 ~ 4853807 (-) True G141205
TU190458 lncRNA downstream 110524 4834450 ~ 4834895 (-) True G141207
TU190429 lncRNA downstream 116273 4773628 ~ 4829146 (-) False peli3
TU190480 lncRNA upstream 74614 5022593 ~ 5023085 (-) True G141222
TU190482 lncRNA upstream 87523 5035502 ~ 5036197 (-) True G141224
TU190491 lncRNA upstream 129649 5077628 ~ 5078216 (-) True G141233
TU190523 lncRNA upstream 260258 5208237 ~ 5208460 (-) True G141259
TU190665 lncRNA upstream 504313 5452292 ~ 5475138 (-) False nat16
XM_039821481.1 mRNA downstream 116257 4793478 ~ 4829162 (-) False peli3
XM_039823408.1 mRNA upstream 90139 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA upstream 90139 5038118 ~ 5084391 (-) True sstr1b
XM_039822976.1 mRNA upstream 167015 5114994 ~ 5119327 (-) True znf16l
XM_039822974.1 mRNA upstream 265159 5213138 ~ 5244957 (-) True LOC120573313
XM_039822981.1 mRNA upstream 371818 5319797 ~ 5335717 (-) False LOC120573316
TU190366 other downstream 281221 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 284308 4660621 ~ 4661111 (-) True G141159
TU190189 other downstream 670145 4274651 ~ 4275274 (-) True G141027
TU190477 other upstream 10700 4958679 ~ 4960005 (-) True G141219
TU190492 other upstream 151726 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 648979 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 795580 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 795580 5743559 ~ 5843146 (-) False G141439

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00015446 True 2310 mRNA 0.65 2 CM030132.1 9657586 ~ 9660979 (-)