RNA id: TU190477


Basic Information

Item Value
RNA id TU190477
length 1327
RNA type TUCP
GC content 0.53
exon number 1
gene id G141219
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4958679 ~ 4960005 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctggaataacactagtactacatgttatcctgcagaaaacattttcagattcatccacttgtatagtgctatcaggatcaatgcctgggggacatgaatctgtgatattttcaacataatgtcaatacttgcctttcagtgtggtcgttatgttgtcagatagcatcctggctccgtgtcggtttgggtggagaccatcacgcttcagcaggttgggcatctcccagaacaagttgaagttgtcgacatagggaatgctcagggaagtgcagagtggttccagccaggtgtggagccagaacagtctggaccatctctcagcacccttcctgtaggtaggtagaggcccagagatgacaatccgcttacctgtgcccatcagggtggagaggagagtggtGAAGTCTCTCCGGAGTGCTGTCGACCGTCCCTCTCTGATGTCGTTTGTGCCCACATGCACGATGATGTTGTCGACCTTGGCGTGGCGGGCGAGGATGCCGGGAagtttgtgctggatgtcaCGGACCTTGGCACCGGGGAAGCAGTAGACCTTAGAGGGACCGCTAGGTAAAGGGGGAATGTGGAGGTCCCTTACCATGGAGCTTCCGATGATCAGCGTGGAGGTTGATGAGTCCGAGGGGGGAGAGTCCGCCCTCAATGGGCGCGTCGATTGTGTCGCTGGACCAGGATGAGCTGCGTGGGGACGTGGCAGAGAAGGGAACTCCTCGTCGTTCGTCAGAATGCTGTAGCGGTTTTCTAGTCGTAGGGGTTGGGCTGGGGCTGAGCGTTGTCCTGACCGCCTGCTCTGGTGCTTGCTTACACGCCATGGCTCCGGctggtgtggagtggagctggTCAGCAGAGCTGGCTGGGTCCTCGGCAGAAGccgaggagagacaacagggacAGAGGTTGTATTAGTGCGTGGTGGGGTGAGAGTATTGCAGGGCACAGTGGAATCAAGACATCCGACAGTGTATGTGTGAGGGGAACTTCCAATGATAATGGAGTCGAGGAACTGTTCACTTGCCTTGATCTGGTGGAGAGTCGATATTCTGGCTTCAAGTTCCACTATCTTCTGGCTGAACAGGAGGCACGAGTCACAGCCAGGTGAACAGCTGAGGGGGGGcatcgtgtagcttgctagtttaGCTAGTAGCAACGTTGATGGAGGCCTTTTCCTAAAACCTAAAAACCTTCACAAGTCGAAATACAATGCAGGTGCTCCTGCTTGTATTAGCAAGCTGTGGATAGCTCGTTACTGTTACCAAAATATGGAATAGATTAGATTTCCCAGGAGGCAAAATCCTGAGTGGTTCGCTTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190465 lncRNA downstream 10700 4944049 ~ 4947979 (-) True G141214
TU190466 lncRNA downstream 10700 4945419 ~ 4947979 (-) False G141214
TU190463 lncRNA downstream 23178 4935282 ~ 4935501 (-) True G141212
TU190456 lncRNA downstream 104872 4852458 ~ 4853807 (-) True G141205
TU190458 lncRNA downstream 123784 4834450 ~ 4834895 (-) True G141207
TU190480 lncRNA upstream 62588 5022593 ~ 5023085 (-) True G141222
TU190482 lncRNA upstream 75497 5035502 ~ 5036197 (-) True G141224
TU190491 lncRNA upstream 117623 5077628 ~ 5078216 (-) True G141233
TU190523 lncRNA upstream 248232 5208237 ~ 5208460 (-) True G141259
TU190665 lncRNA upstream 492287 5452292 ~ 5475138 (-) False nat16
XM_039821487.1 mRNA downstream 129517 4793478 ~ 4829162 (-) False peli3
XM_039821486.1 mRNA downstream 129517 4793478 ~ 4829162 (-) False peli3
XM_039821482.1 mRNA downstream 129517 4793478 ~ 4829162 (-) False peli3
XM_039821485.1 mRNA downstream 129517 4793478 ~ 4829162 (-) False peli3
XM_039821484.1 mRNA downstream 129517 4793478 ~ 4829162 (-) False peli3
XM_039823408.1 mRNA upstream 78113 5038118 ~ 5084391 (-) False sstr1b
XM_039823407.1 mRNA upstream 78113 5038118 ~ 5084391 (-) True sstr1b
XM_039822976.1 mRNA upstream 154989 5114994 ~ 5119327 (-) True znf16l
XM_039822974.1 mRNA upstream 253133 5213138 ~ 5244957 (-) True LOC120573313
XM_039822981.1 mRNA upstream 359792 5319797 ~ 5335717 (-) False LOC120573316
TU190366 other downstream 294481 4641495 ~ 4664198 (-) True G141145
TU190380 other downstream 297568 4660621 ~ 4661111 (-) True G141159
TU190189 other downstream 683405 4274651 ~ 4275274 (-) True G141027
TU190191 other downstream 683405 4274651 ~ 4275274 (-) False G141027
TU190193 other downstream 683405 4274651 ~ 4275274 (-) False G141027
TU190492 other upstream 139700 5099705 ~ 5100082 (-) True G141234
TU190708 other upstream 636953 5596958 ~ 5600462 (-) True G141400
TU190759 other upstream 783554 5743559 ~ 5843146 (-) False G141439
TU190760 other upstream 783554 5743559 ~ 5843146 (-) False G141439
TU190761 other upstream 783554 5743559 ~ 5782623 (-) False G141439

Expression Profile